TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|303284831|ref|XP_003061706.1| selenoprotein M [Micromonas
pusilla CCMP1545]
         (170 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.1398 of Sphaeroforma arctica JP610                          34   0.19 
supercont1.246 of Sphaeroforma arctica JP610                           29   4.6  
supercont1.75 of Sphaeroforma arctica JP610                            29   6.1  

>supercont1.1398 of Sphaeroforma arctica JP610
          Length = 15858

 Score = 33.9 bits (76), Expect = 0.19
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 96    DDGKTEVMRENVEDWGIRKVRETLSERGFRKTDDDGGFGG 135
             DD   +V REN  DW I + R+ + +R   K   DG +GG
Sbjct: 10068 DDWGRKVYRENSRDWSIDENRDEIGQRRQDKDTGDGDWGG 9949


>supercont1.246 of Sphaeroforma arctica JP610
          Length = 102606

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 8     VLATLLGFLLVAVATAPAAADAARSLRAADVPAAAGARAVFV 49
             +  TL+  ++VA A A AAA    +++ A  PAAA    V V
Sbjct: 60302 ISVTLVVVVVVAAAAAAAAAAVTTAIKRARTPAAAAVAGVVV 60177


>supercont1.75 of Sphaeroforma arctica JP610
          Length = 171072

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 131  GGFGGGGGVRRANDVNAFAAFSKSGEADRTTVR 163
            GG+G  GG RR   + AF+A SKS      T R
Sbjct: 2169 GGYGTVGGRRRIRAIIAFSALSKSPLRQNPTAR 2267


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.317    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,719,431
Number of Sequences: 15618
Number of extensions: 178240
Number of successful extensions: 983
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 811
length of query: 170
length of database: 40,529,447
effective HSP length: 101
effective length of query: 69
effective length of database: 38,952,029
effective search space: 2687690001
effective search space used: 2687690001
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)