TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|303284831|ref|XP_003061706.1| selenoprotein M [Micromonas
pusilla CCMP1545]
         (170 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_26                                                       32   0.54 
PHYCAscaffold_37                                                       30   2.1  
PHYCAscaffold_3                                                        30   2.1  
PHYCAscaffold_62                                                       28   4.6  
PHYCAscaffold_57                                                       28   4.6  
PHYCAscaffold_48                                                       28   7.8  
PHYCAscaffold_10                                                       28   7.8  

>PHYCAscaffold_26
          Length = 730565

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -2

Query: 46     AVFVSCPSXRLKRFPELKRLMKDEVEAGAWGDDVTV-KWEHGHPVTLVVYGDDGKTEVMR 104
              +VF SC S R  R  + +R     ++  A  DDV V  W       L    DDG  ++  
Sbjct: 178120 SVFASCSSDRTVRIWDTRRKAGSMLDVAAHDDDVNVISWNRNVAYLLASGSDDGSFKI-- 177947

Query: 105    ENVEDWGIRK 114
                   W +RK
Sbjct: 177946 -----WDLRK 177932


>PHYCAscaffold_37
          Length = 577888

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
 Frame = +1

Query: 96     DDGKTEVMRENVEDW---GIRKVRETLSERGFRKTDDDGGFGGGGGVRRANDVNAFAAF 151
              D    +   E  E W   G    R+     G    D+ GGFGGGGG +     + F  F
Sbjct: 512527 DPDAAKKFAEATEAWEILGDDDKRQKYDAYGHAGVDEQGGFGGGGGFQGQGFEDIFGEF 512703


>PHYCAscaffold_3
          Length = 1611504

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 85     HGHPVTLVVYGDDGKTEVMRENVEDWGIRKVRETLSERG 123
              HGHP  L   GDD   E M + + D+   +  E++  RG
Sbjct: 193387 HGHPDFLFCIGDDTTDESMFKAIYDYYAERTEESVHGRG 193503


>PHYCAscaffold_62
          Length = 322952

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 94    YGDDGKTEVMRENVEDWGIRKVRETLSERGFRKTDDDGGFGGGGGVR 140
             +GDD + +V+ E V+  G+      +   G  K   +GGFGGG  +R
Sbjct: 71715 FGDDRQRDVV-EVVQSLGV-----IVDVHGLAKLCPEGGFGGGSSIR 71837


>PHYCAscaffold_57
          Length = 397303

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 94    YGDDGKTEVMRENVEDWGIRKVRETLSERGFRKTDDDGGFGGGGGVR 140
             +GDD + +V+ E ++  G+      +   G  K   +GG GGGG VR
Sbjct: 28350 FGDDRQRDVV-EVIQSLGV-----IVDVHGLAKLCPEGGLGGGGSVR 28472


>PHYCAscaffold_48
          Length = 534789

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 111   GIRKVRETL--SERGFRKTDDDGGFGGGGGVRRANDVNAFAAFSKSGEAD 158
             G+++ R  +    R  R+  DDGG G GGG   A  V A   F+   + D
Sbjct: 23461 GVQRGRSRIR*GHRRSRRQRDDGGDGSGGGGGEAGYVAACRRFADVSDDD 23312


>PHYCAscaffold_10
          Length = 1190366

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
 Frame = +2

Query: 1      MASSSARVLATLLGFLLVAVATAPAAADAARSLRAADVPAAAGARAVFVSCPSXRLKRFP 60
              + +S    L+ L+G+    +A   A++   RS+    +      R+V V+CP     +  
Sbjct: 167675 VTTSRTFALSWLVGYGARLMAALCASSAPRRSMSLECLLFQTRRRSVRVACPRHL*TKCA 167854

Query: 61     ELKRLMKDEVEAGAW--GDDVTVKWEHGHPVTLVVYGDDGKTE 101
               +   +K   + G +  G  +  +W  G PV  VVY  + K E
Sbjct: 167855 SVLPFVKRPNDEGRFCIGGGI*HEWLRGQPVRHVVYFMEPKNE 167983


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.317    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,796,282
Number of Sequences: 917
Number of extensions: 136752
Number of successful extensions: 995
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 494
length of query: 170
length of database: 21,341,249
effective HSP length: 97
effective length of query: 73
effective length of database: 21,252,300
effective search space: 1551417900
effective search space used: 1551417900
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)