TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|303284831|ref|XP_003061706.1| selenoprotein M [Micromonas pusilla CCMP1545] (170 letters) Database: G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|338244951|gb|AFNH01000689.1| Gregarina niphandrodes asmbl.159... 29 0.89 gi|338243733|gb|AFNH01001298.1| Gregarina niphandrodes asmbl.213... 28 1.2 gi|338244931|gb|AFNH01000699.1| Gregarina niphandrodes asmbl.160... 28 1.2 gi|338240389|gb|AFNH01002972.1| Gregarina niphandrodes asmbl.367... 28 1.5 gi|338239652|gb|AFNH01003340.1| Gregarina niphandrodes asmbl.690... 28 2.0 gi|338241047|gb|AFNH01002643.1| Gregarina niphandrodes asmbl.336... 27 3.4 gi|338240383|gb|AFNH01002975.1| Gregarina niphandrodes asmbl.367... 26 5.8 gi|338242515|gb|AFNH01001907.1| Gregarina niphandrodes asmbl.269... 26 5.8 gi|338239359|gb|AFNH01003486.1| Gregarina niphandrodes asmbl.821... 25 9.8 gi|338239383|gb|AFNH01003474.1| Gregarina niphandrodes asmbl.810... 25 9.8 gi|338240424|gb|AFNH01002954.1| Gregarina niphandrodes asmbl.365... 25 9.8 gi|338240444|gb|AFNH01002944.1| Gregarina niphandrodes asmbl.364... 25 9.8 gi|338240450|gb|AFNH01002941.1| Gregarina niphandrodes asmbl.364... 25 9.8 gi|338240515|gb|AFNH01002908.1| Gregarina niphandrodes asmbl.361... 25 9.8 gi|338240785|gb|AFNH01002773.1| Gregarina niphandrodes asmbl.349... 25 9.8 gi|338241131|gb|AFNH01002601.1| Gregarina niphandrodes asmbl.332... 25 9.8 gi|338242289|gb|AFNH01002020.1| Gregarina niphandrodes asmbl.279... 25 9.8 >gi|338244951|gb|AFNH01000689.1| Gregarina niphandrodes asmbl.15998, whole genome shotgun sequence Length = 11956 Score = 28.9 bits (63), Expect = 0.89 Identities = 17/36 (47%), Positives = 19/36 (52%) Frame = +3 Query: 127 TDDDGGFGGGGGVRRANDVNAFAAFSKSGEADRTTV 162 T GG GGGGG R V+AFA GE R +V Sbjct: 9414 TRTGGGTGGGGGRGRRRGVSAFA----GGEGGRVSV 9509 >gi|338243733|gb|AFNH01001298.1| Gregarina niphandrodes asmbl.2132, whole genome shotgun sequence Length = 1110 Score = 28.5 bits (62), Expect = 1.2 Identities = 16/32 (50%), Positives = 18/32 (56%) Frame = +3 Query: 131 GGFGGGGGVRRANDVNAFAAFSKSGEADRTTV 162 GG GGGGG R V+AFA GE R +V Sbjct: 813 GGTGGGGGRGRRRGVSAFA----GGEGGRVSV 896 >gi|338244931|gb|AFNH01000699.1| Gregarina niphandrodes asmbl.16005, whole genome shotgun sequence Length = 29705 Score = 28.5 bits (62), Expect = 1.2 Identities = 20/50 (40%), Positives = 28/50 (56%) Frame = -2 Query: 1 MASSSARVLATLLGFLLVAVATAPAAADAARSLRAADVPAAAGARAVFVS 50 +A ++A + LL L A A + AAA A+ + AA V AAA A +V S Sbjct: 12136 VAVAAAAAASVLLLHLAAAAAASVAAAAASVAAAAASVAAAAFAASVAAS 11987 Score = 27.7 bits (60), Expect = 2.0 Identities = 15/26 (57%), Positives = 16/26 (61%) Frame = +3 Query: 19 AVATAPAAADAARSLRAADVPAAAGA 44 A A AA DAA + AAD AAAGA Sbjct: 12162 AATDAAAAEDAAAAAAAADASAAAGA 12239 Score = 25.4 bits (54), Expect = 9.8 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +3 Query: 2 ASSSARVLATLLGFLLVAVAT-APAAADAARSLRAADVPAAAGARAVFVS 50 A+++AR ++ A AT A AAADAA + AA AAA A A S Sbjct: 12075 AAAAARCSSSTDAAAAAATATDAAAAADAAATDAAAAEDAAAAAAAADAS 12224 >gi|338240389|gb|AFNH01002972.1| Gregarina niphandrodes asmbl.3673, whole genome shotgun sequence Length = 12227 Score = 28.1 bits (61), Expect = 1.5 Identities = 19/48 (39%), Positives = 25/48 (52%) Frame = -2 Query: 3 SSSARVLATLLGFLLVAVATAPAAADAARSLRAADVPAAAGARAVFVS 50 SSS L + LVA + A A +A +L AA V AA+ A +V S Sbjct: 6883 SSSVTTLVRVPVTALVAASAAALVAASAAALVAASVAAASAAASVIAS 6740 >gi|338239652|gb|AFNH01003340.1| Gregarina niphandrodes asmbl.690, whole genome shotgun sequence Length = 4023 Score = 27.7 bits (60), Expect = 2.0 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = +1 Query: 1 MASSSARVLATLLGFLLVAVATAPAA-ADAARSLRAADVPAAAGARAVFVSCPSXR 55 ++SS+A V T V ATAPAA A+ S R++ PA +SCPS R Sbjct: 1879 LSSSTAAVCVTCTPPPGVEPATAPAASAEMRPSTRSSAAPAPTA--PALLSCPSFR 2040 >gi|338241047|gb|AFNH01002643.1| Gregarina niphandrodes asmbl.3369, whole genome shotgun sequence Length = 26167 Score = 26.9 bits (58), Expect = 3.4 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = +2 Query: 135 GGGGVRRANDVNAFAAFSKSGEADRTT 161 GGGGVR A +AA S DRTT Sbjct: 11354 GGGGVRGAGYRGLYAATKSSCHLDRTT 11434 >gi|338240383|gb|AFNH01002975.1| Gregarina niphandrodes asmbl.3676, whole genome shotgun sequence Length = 13303 Score = 26.2 bits (56), Expect = 5.8 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -2 Query: 125 RKTDDDGGFGGGGGVR 140 R + +GG+GGGGGVR Sbjct: 11181 RFLEGEGGWGGGGGVR 11134 >gi|338242515|gb|AFNH01001907.1| Gregarina niphandrodes asmbl.2690, whole genome shotgun sequence Length = 60929 Score = 26.2 bits (56), Expect = 5.8 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 9 LATLLGFLLVAVATAPAAADAARSLRAADVP 39 L LLG L + +TAP + + R LRA + P Sbjct: 2536 LGALLGAELASFSTAPPSTETGRLLRAPNDP 2628 >gi|338239359|gb|AFNH01003486.1| Gregarina niphandrodes asmbl.821, whole genome shotgun sequence Length = 2260 Score = 25.4 bits (54), Expect = 9.8 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 2/27 (7%) Frame = +2 Query: 17 LVAVATAPAAADAARSL--RAADVPAA 41 L++VA APA A AR+ RAA VPA+ Sbjct: 1052 LISVAPAPARAAPARAAPARAAPVPAS 1132 >gi|338239383|gb|AFNH01003474.1| Gregarina niphandrodes asmbl.810, whole genome shotgun sequence Length = 1629 Score = 25.4 bits (54), Expect = 9.8 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 6/31 (19%) Frame = -3 Query: 122 RGFRKTDD------DGGFGGGGGVRRANDVN 146 RG+R+ D DG GGGG RRAN V+ Sbjct: 289 RGWRRGDGFGVGARDGV*GGGGDSRRANAVD 197 >gi|338240424|gb|AFNH01002954.1| Gregarina niphandrodes asmbl.3657, whole genome shotgun sequence Length = 20249 Score = 25.4 bits (54), Expect = 9.8 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +1 Query: 17 LVAVATAPAAADAARSLRAADVPAAAGARAVFVSCPSXRLKRFPEL 62 L AVA++PAA + R + ++P+ G R V SC L F L Sbjct: 9751 LSAVASSPAACVSHRQAQVENLPSGQG-RRVKTSCEHILLVVFTPL 9885 >gi|338240444|gb|AFNH01002944.1| Gregarina niphandrodes asmbl.3648, whole genome shotgun sequence Length = 12668 Score = 25.4 bits (54), Expect = 9.8 Identities = 17/57 (29%), Positives = 28/57 (49%) Frame = +1 Query: 104 RENVEDWGIRKVRETLSERGFRKTDDDGGFGGGGGVRRANDVNAFAAFSKSGEADRT 160 R++ + G+R T G +T +GG GGG R D+ A A + G A+++ Sbjct: 8458 RKDSSEQGLR----TAGANGNTETRANGGGGGGESARGGGDMTARTA--RGGSANKS 8610 >gi|338240450|gb|AFNH01002941.1| Gregarina niphandrodes asmbl.3645, whole genome shotgun sequence Length = 42255 Score = 25.4 bits (54), Expect = 9.8 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = -2 Query: 1 MASSSARVLATLLGFLLVAVATAPAAADAARSLRAADVPAAAGA 44 +AS +A A+L +A A + AAA AA AA + AAA + Sbjct: 15692 VASLAAASAASLAAAASLAAAASLAAASAASLAAAASLAAAASS 15561 >gi|338240515|gb|AFNH01002908.1| Gregarina niphandrodes asmbl.3614, whole genome shotgun sequence Length = 14547 Score = 25.4 bits (54), Expect = 9.8 Identities = 18/62 (29%), Positives = 23/62 (37%) Frame = +1 Query: 71 EAGAWGDDVTVKWEHGHPVTLVVYGDDGKTEVMRENVEDWGIRKVRETLSERGFRKTDDD 130 E+ WGD + KW G + DG++ RE E L F D D Sbjct: 55 ESANWGDSLVAKWIGG----VTAPSSDGRSRAQRE-----------EDLVCGTFNIPDPD 189 Query: 131 GG 132 GG Sbjct: 190 GG 195 >gi|338240785|gb|AFNH01002773.1| Gregarina niphandrodes asmbl.3492, whole genome shotgun sequence Length = 21532 Score = 25.4 bits (54), Expect = 9.8 Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Frame = +2 Query: 111 GIRKVRETLSERGFRKTD-DDGGFGGGGGVRRAND 144 G R R RG R D DDGG G GGG A D Sbjct: 9920 GHRGERHDGDHRGERHDDVDDGGPGCGGGCSAAVD 10024 >gi|338241131|gb|AFNH01002601.1| Gregarina niphandrodes asmbl.3327, whole genome shotgun sequence Length = 18561 Score = 25.4 bits (54), Expect = 9.8 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Frame = +3 Query: 105 ENVEDWGIRKVRETLSER---GFRKTDDDGGFGGGGGVRRANDVNAFAAFSKSG 155 +NVE + K R+T+ + GFR +DGG G G RR F SG Sbjct: 13602 KNVEVQNLIKARQTIELKFIKGFRDGGNDGG-DGHGAYRRLISSKLFDKCCTSG 13760 >gi|338242289|gb|AFNH01002020.1| Gregarina niphandrodes asmbl.2793, whole genome shotgun sequence Length = 6737 Score = 25.4 bits (54), Expect = 9.8 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%) Frame = +3 Query: 122 RGFRKTD------DDGGFGGGGGVRRANDVN 146 RG+R+ D DG GGGG RRAN ++ Sbjct: 4197 RGWRRGDGFGVGAQDGV*GGGGDSRRANAID 4289 Database: G.niphandrodes/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.317 0.132 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,868,996 Number of Sequences: 3680 Number of extensions: 39832 Number of successful extensions: 437 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 383 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 435 length of query: 170 length of database: 5,120,956 effective HSP length: 88 effective length of query: 82 effective length of database: 4,797,116 effective search space: 393363512 effective search space used: 393363512 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.4 bits)