TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|303284831|ref|XP_003061706.1| selenoprotein M [Micromonas
pusilla CCMP1545]
         (170 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos...    30   0.88 
gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso...    28   2.6  
gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromoso...    28   4.4  
gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso...    28   4.4  
gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso...    27   5.7  
gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso...    27   5.7  

>gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2,
               whole genome shotgun sequence
          Length = 8484197

 Score = 30.0 bits (66), Expect = 0.88
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +3

Query: 75      WGDDVTVKWEHGHPVTLVVYGDDGKTEVMRENVEDWGIRKVRETLSERGFRKTDDDGGFG 134
               WGDD     +    V  + + ++ K E  + N++       + T SE    + DDD GFG
Sbjct: 6944466 WGDDFNTVSDLSKAVGSLNFNNNKKNETPKPNIK-------KPTFSEDE-DEDDDDDGFG 6944621

Query: 135     GGG 137
                GG
Sbjct: 6944622 SGG 6944630


>gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole
               genome shotgun sequence
          Length = 6357299

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +1

Query: 20      VATAPAAADAARSLRAADVPAAAGARAVFVS----CPSXRLKRFPELKRLMKDEVEA 72
               VA A  AADA  S +AAD   AA A A   +          K+  + K+   DE EA
Sbjct: 2064502 VADAKKAADAEESKKAADAKKAADAEAKKAAEAKKAADAEAKKAADAKKAAADEEEA 2064672


>gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole
               genome shotgun sequence
          Length = 3602379

 Score = 27.7 bits (60), Expect = 4.4
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 127     TDDDGGFGGGGGVRR-ANDVNAFAAFSKSGEADRTTVRTQPIN 168
               T+  G  GGGGG+    N+  +F++ S S  +  TT+ + P N
Sbjct: 1852170 TNGIGSSGGGGGLDCFGNNNQSFSSSSSSPSSSSTTISSSPNN 1852298


>gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole
               genome shotgun sequence
          Length = 4923596

 Score = 27.7 bits (60), Expect = 4.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 42      AGARAVFVSCPSXRLKRFPELKRLMKDEVEAGAWGDDVTVKWEHG 86
               AGA A  V+CP   +K   +++R  + ++  G W    T+  E G
Sbjct: 2699757 AGAFAAAVTCPLDVIKTRIQVQRSTEKQIYKGMWDSFKTILKEEG 2699891



 Score = 26.6 bits (57), Expect = 9.8
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 13/41 (31%)
 Frame = -2

Query: 112     IRKVRETLSER-------------GFRKTDDDGGFGGGGGV 139
               +RK+R+ LS +              F   DDD G GGGGGV
Sbjct: 3777334 LRKIRQPLSLKLLIKQSDVTIFLFSFILGDDDDGDGGGGGV 3777212


>gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5,
              whole genome shotgun sequence
          Length = 5125352

 Score = 27.3 bits (59), Expect = 5.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 134    GGGGGVRRANDVNAFAAFSKSGE 156
              GGG G+ + N  N  A  SKSG+
Sbjct: 779626 GGGNGIIKLNSTNPTATISKSGQ 779694



 Score = 26.6 bits (57), Expect = 9.8
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -3

Query: 128    DDDGGFGGGGG 138
              DDDGG GGGGG
Sbjct: 668124 DDDGGGGGGGG 668092


>gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole
               genome shotgun sequence
          Length = 5450249

 Score = 27.3 bits (59), Expect = 5.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 116     RETLSERGFRKTDDDGGFGGGGGVRRAND 144
               R T+  +     DDDG  GGG G R  ND
Sbjct: 4571681 RLTIDIKNSSNGDDDGTGGGGDGNRETND 4571767


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.317    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,830,332
Number of Sequences: 6
Number of extensions: 22559
Number of successful extensions: 336
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 157
length of query: 170
length of database: 11,314,357
effective HSP length: 93
effective length of query: 77
effective length of database: 11,313,799
effective search space: 871162523
effective search space used: 871162523
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)