TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|303284831|ref|XP_003061706.1| selenoprotein M [Micromonas
pusilla CCMP1545]
         (170 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330850458|gb|ADNL01000145.1| Astrammina rara contig00152, who...    23   2.5  
gi|330849976|gb|ADNL01000627.1| Astrammina rara contig00704, who...    22   5.7  
gi|330848154|gb|ADNL01002449.1| Astrammina rara contig02914, who...    22   7.4  
gi|330848390|gb|ADNL01002213.1| Astrammina rara contig02646, who...    22   9.7  
gi|330849490|gb|ADNL01001113.1| Astrammina rara contig01306, who...    22   9.7  

>gi|330850458|gb|ADNL01000145.1| Astrammina rara contig00152, whole
           genome shotgun sequence
          Length = 289

 Score = 23.5 bits (49), Expect = 2.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 129 DDGGFGGGGGVRRANDVNAF 148
           + GG+GGG  +   ND N F
Sbjct: 198 EGGGYGGGFKLSTRNDSNVF 257


>gi|330849976|gb|ADNL01000627.1| Astrammina rara contig00704, whole
           genome shotgun sequence
          Length = 1096

 Score = 22.3 bits (46), Expect = 5.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 127 TDDDGGFGGGGG 138
           T D+ G+GGGGG
Sbjct: 686 TTDNKGWGGGGG 721


>gi|330848154|gb|ADNL01002449.1| Astrammina rara contig02914, whole
            genome shotgun sequence
          Length = 13323

 Score = 21.9 bits (45), Expect = 7.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 130  DGGFGGGGG 138
            DGG GGGGG
Sbjct: 2030 DGGGGGGGG 2004



 Score = 21.6 bits (44), Expect = 9.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 125  RKTDDDGGF 133
            R TDDDGGF
Sbjct: 3599 RVTDDDGGF 3573


>gi|330848390|gb|ADNL01002213.1| Astrammina rara contig02646, whole
            genome shotgun sequence
          Length = 3281

 Score = 21.6 bits (44), Expect = 9.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 7    RVLATLLGFLLVAVATAPAAADAARSLRAADVPAAAGARAVFVSC 51
            R   TLL F    V+ AP A++ +++L           +A+ V+C
Sbjct: 1953 RKYRTLLNFQRDTVSIAPTASNTSQNLTQQHRMFTVRIQALRVTC 1819


>gi|330849490|gb|ADNL01001113.1| Astrammina rara contig01306, whole
           genome shotgun sequence
          Length = 205

 Score = 21.6 bits (44), Expect = 9.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 96  DDGKTEVMRENVEDWGIRKVRETLSE 121
           D+G +E      ED+ I KV  T +E
Sbjct: 96  DEGLSEFYAVMCEDYNIEKVSNTRTE 173


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.317    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,424
Number of Sequences: 3231
Number of extensions: 1874
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 170
length of database: 483,365
effective HSP length: 68
effective length of query: 102
effective length of database: 263,657
effective search space: 26893014
effective search space used: 26893014
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 44 (21.6 bits)