TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|303284831|ref|XP_003061706.1| selenoprotein M [Micromonas
pusilla CCMP1545]
         (170 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325179861|emb|FR824048.1| Albugo laibachii Nc14, genomic cont...    25   2.6  
gi|325189723|emb|FR824272.1| Albugo laibachii Nc14, genomic cont...    27   5.3  
gi|325180954|emb|FR824056.1| Albugo laibachii Nc14, genomic cont...    27   9.1  

>gi|325179861|emb|FR824048.1| Albugo laibachii Nc14, genomic contig
              CONTIG_3_NC14_v4_366484_228
          Length = 366484

 Score = 24.6 bits (52), Expect(2) = 2.6
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 123    GFRKTDDDGGFGGGGG 138
              GFR   +DGG GGGGG
Sbjct: 172853 GFR---NDGGLGGGGG 172891



 Score = 21.2 bits (43), Expect(2) = 2.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 131    GGFGGGGGV 139
              GGFG GGG+
Sbjct: 172892 GGFGNGGGL 172918


>gi|325189723|emb|FR824272.1| Albugo laibachii Nc14, genomic contig
             CONTIG_227_NC14_v4_42575_175
          Length = 42575

 Score = 27.3 bits (59), Expect = 5.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 8     VLATLLGFLLVAVATAPAAADAARSLRAADVPAAAGARAV 47
             +  T+ GF  +A  TAP+ A A RS R   +  A   RAV
Sbjct: 19443 IFETIPGFCRIADKTAPSLAPAVRSCRTFYLI*AGNLRAV 19324


>gi|325180954|emb|FR824056.1| Albugo laibachii Nc14, genomic contig
              CONTIG_11_NC14_v4_227311_235
          Length = 227311

 Score = 26.6 bits (57), Expect = 9.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 120    SERGFRKTDDDGGFGGGGGVR 140
              S+RG+     D G+GGGGG R
Sbjct: 202332 SDRGYGGGGGDRGYGGGGGDR 202394


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.317    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,618,410
Number of Sequences: 3816
Number of extensions: 50383
Number of successful extensions: 273
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 234
length of query: 170
length of database: 10,913,379
effective HSP length: 93
effective length of query: 77
effective length of database: 10,558,491
effective search space: 813003807
effective search space used: 813003807
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)