TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Xenopus tropicalis precursor
         (133 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T.congo.pschr.9                                                        26   5.0  
T.congo.pschr4                                                         26   5.0  
T.congo.pschr.11                                                       26   6.5  

>T.congo.pschr.9
          Length = 2092392

 Score = 26.2 bits (56), Expect = 5.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 70     PELVLITSKYEELERIPLRDMKRSEIIQLLKDLGFYRKSSPDALV 114
              P L L   K    +   +R  +R+  +   +D   YR+S PDALV
Sbjct: 579899 PSLYLEEMKISSSDGNGVRKFRRTFSLVARRDWPLYRRSVPDALV 580033


>T.congo.pschr4
          Length = 1343510

 Score = 26.2 bits (56), Expect = 5.0
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 48     AFVTDDLPLYHNLEMKHIPGADPELVLITSKYEELERIPLRDMKRSEIIQLL 99
              A +T D      L+++H  GADP +    + +  L + PL    RSE++ LL
Sbjct: 960578 AVITGD----QRLQLRH-NGADPPIATRFAFHHHLPKQPLNCSDRSEVVFLL 960718



 Score = 26.2 bits (56), Expect = 5.0
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -3

Query: 49     FVTDDLPLYHNLEMKHIPGADPELVLITSKYEELERIPLRDMKRSEIIQLLKDLGFY 105
              FV +D PL+  L     PG DP             R P  ++ R+   ++ KD GFY
Sbjct: 145608 FVAEDEPLFKGLIGDLFPGLDP------------TRAPQENLSRA-ASKVFKDKGFY 145477


>T.congo.pschr.11
          Length = 4797796

 Score = 25.8 bits (55), Expect = 6.5
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 1       MWRPL--LLLGLLQPILGYQIDWNKLDRIAR 29
               MW PL  + +  L   L ++I WNK+  IAR
Sbjct: 2426047 MWLPL*FVRINSLSEALSFRIVWNKIFSIAR 2425955


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.320    0.141    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,246,228
Number of Sequences: 11
Number of extensions: 39435
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 45
length of query: 133
length of database: 7,429,315
effective HSP length: 87
effective length of query: 46
effective length of database: 7,428,358
effective search space: 341704468
effective search space used: 341704468
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)