TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Xenopus tropicalis precursor
         (133 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_19                                                       28   2.5  
PHYCAscaffold_388                                                      27   5.6  
PHYCAscaffold_13                                                       27   5.6  
PHYCAscaffold_8                                                        27   5.6  
PHYCAscaffold_34                                                       27   9.5  

>PHYCAscaffold_19
          Length = 944885

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 42     RLKEVKAFVTDDLPLYHNLEMKHIPGAD 69
              R   +  F+ DDLPL+H + +   PG D
Sbjct: 697197 RDSNIPKFLADDLPLFHAIVLDLFPGTD 697280


>PHYCAscaffold_388
          Length = 4634

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +2

Query: 74   LITSKYEELERIPLRDMKRSEIIQLLKDLGFYRKSSPDALVPAEFKMAPARASGDKKEDL 133
            L+  + +E++R   RD+ + EII++ KDL      S    +  +    P +    K+ED+
Sbjct: 1793 LVAYRAKEMQRQEKRDILQREIIRVYKDLVQEEAESEVERLRKQHTEEPFKLEPPKREDI 1972


>PHYCAscaffold_13
          Length = 1060349

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 17     YQIDWNKLDRIARGKVESCG 36
              ++ DW  LD++ R K+E CG
Sbjct: 936283 FRQDWEMLDKVRRLKIEHCG 936342


>PHYCAscaffold_8
          Length = 1194346

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 84     RIPLRDMKRSEIIQLLKDLGFYRKSSP 110
              R+P+    RS  + ++  LGFYR S+P
Sbjct: 451342 RLPVHSYLRSVFVVVVSPLGFYRVSAP 451422


>PHYCAscaffold_34
          Length = 622686

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +2

Query: 8      LGLLQPILGYQIDWNKLDRIARGKVESCGGXQLNRLKEV 46
              +G ++ + G+Q + N LD + + +V SCG  +  R+ ++
Sbjct: 410123 MGYVETLFGHQSEVNGLDSMYKERVVSCGRDRSVRMWKI 410239


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.320    0.141    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,335,971
Number of Sequences: 917
Number of extensions: 112351
Number of successful extensions: 407
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 137
length of query: 133
length of database: 21,341,249
effective HSP length: 93
effective length of query: 40
effective length of database: 21,255,968
effective search space: 850238720
effective search space used: 850238720
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)