TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Xenopus tropicalis precursor
         (133 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig6524  |  | 1 to 20141                                         28   1.3  
Lt_contig6501  |  | 1 to 8634                                          28   1.3  
Lt_contig7234  |  | 1 to 3762                                          28   1.7  
Lt_contig4284  |  | 1 to 7498                                          27   3.8  
Lt_contig4659  |  | 1 to 4195                                          26   6.5  
Lt_contig540  |  | 1 to 29965                                          26   8.5  

>Lt_contig6524  |  | 1 to 20141
          Length = 20141

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +1

Query: 49    FVTDDLPLYH--NLEMKHIPGAD-PELVLITSKYEELERIPLRDMKR 92
             F  DD PL     L  +H+  +D P  V ITS YE+L R   +++KR
Sbjct: 18370 FTLDDSPLPEVAALIKRHVCDSDIPHWVSITSLYEQLTRAQKQEIKR 18510


>Lt_contig6501  |  | 1 to 8634
          Length = 8634

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -1

Query: 73   VLITSKYEELERIPLRDMKRSEIIQLLKDLGF 104
            +L T   EEL+RIP  D+ R+E++QL++D  +
Sbjct: 4413 ILTTLFDEELQRIPRYDL-RTELVQLVRDRSY 4321


>Lt_contig7234  |  | 1 to 3762
          Length = 3762

 Score = 28.1 bits (61), Expect = 1.7
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = -1

Query: 16   GYQIDWNKLDRIARGKVESCGGXQLNRLKEVKAFVTDDLPLYHNLEMKHI 65
            G    W  + R+ RG +  C G    R   V    T   PL+H +   +I
Sbjct: 3327 GTATPWTPILRLCRGLLLPCAGVNTCRQVRVACLRTPASPLFHRVAFSYI 3178


>Lt_contig4284  |  | 1 to 7498
          Length = 7498

 Score = 26.9 bits (58), Expect = 3.8
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 32   VESCGGXQLNRLKEVKAFVTDDLPLYHNLEMKHIPGADPELVLITSKYEELERI 85
            V  CGG    +  +  A V+  L  +  +   H+P A P L ++    ++LER+
Sbjct: 7107 VSLCGGRPAAQRPQPAAQVSRQLRSHGQVHASHVPAAQPSLPVL----QDLERL 6958


>Lt_contig4659  |  | 1 to 4195
          Length = 4195

 Score = 26.2 bits (56), Expect = 6.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 48   AFVTDDLPLYHNLEMKHIPGADPELVLITSKYEELERI 85
            A+  DDL L   L  +H+P   P+L L   + +EL+ I
Sbjct: 3468 AYFADDLCLLL-LRQRHVPF*QPDLTLAAHQQQELDHI 3358


>Lt_contig540  |  | 1 to 29965
          Length = 29965

 Score = 25.8 bits (55), Expect = 8.5
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -1

Query: 28   ARGKVESCGGXQLNRLK 44
            A+GKV SCG   LNRLK
Sbjct: 7153 AKGKVCSCGEQGLNRLK 7103


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.320    0.141    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,693,889
Number of Sequences: 7267
Number of extensions: 55218
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of query: 133
length of database: 10,532,946
effective HSP length: 88
effective length of query: 45
effective length of database: 9,893,450
effective search space: 445205250
effective search space used: 445205250
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)