TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Xenopus tropicalis precursor
         (133 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338240650|gb|AFNH01002841.1| Gregarina niphandrodes asmbl.355...    27   2.0  
gi|338241332|gb|AFNH01002499.1| Gregarina niphandrodes asmbl.323...    26   4.5  
gi|338242417|gb|AFNH01001956.1| Gregarina niphandrodes asmbl.273...    26   4.5  
gi|338239850|gb|AFNH01003241.1| Gregarina niphandrodes asmbl.600...    25   5.9  
gi|338240434|gb|AFNH01002949.1| Gregarina niphandrodes asmbl.365...    25   5.9  
gi|338239239|gb|AFNH01003545.1| Gregarina niphandrodes asmbl.875...    25   7.7  

>gi|338240650|gb|AFNH01002841.1| Gregarina niphandrodes asmbl.3553,
            whole genome shotgun sequence
          Length = 10626

 Score = 26.9 bits (58), Expect = 2.0
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
 Frame = -1

Query: 55   PLYHNLEMKHIPGADPELV------------LITSKYEELERIPLRDMKRSEIIQLLKDL 102
            P  H L++  +P  DP  V            L      +L R+P RD++R     L +DL
Sbjct: 7077 PSRHQLQVGRVPQRDPRRVPQRDLRRVPQRDLRRVPQRDLRRVPQRDLRRVPQRDLRRDL 6898

Query: 103  GFYRKSSP 110
                + +P
Sbjct: 6897 RQVARQAP 6874


>gi|338241332|gb|AFNH01002499.1| Gregarina niphandrodes asmbl.3233,
           whole genome shotgun sequence
          Length = 9413

 Score = 25.8 bits (55), Expect = 4.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 34  SCGGXQLNRLKEVKAFVTDDLPL 56
           SCGG  L RL++  A +  DLPL
Sbjct: 786 SCGGFPLQRLEQSLARLPADLPL 854


>gi|338242417|gb|AFNH01001956.1| Gregarina niphandrodes asmbl.2735,
             whole genome shotgun sequence
          Length = 14275

 Score = 25.8 bits (55), Expect = 4.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 20    DWNKLDRIARGKVESCGGXQLNRLKEVKAFVTD 52
             DWNKLD +    V++C    L     +++++ D
Sbjct: 13201 DWNKLDEMKEADVDACSIAYLELGTIIESYMRD 13299


>gi|338239850|gb|AFNH01003241.1| Gregarina niphandrodes asmbl.600,
            whole genome shotgun sequence
          Length = 1931

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 91   KRSEIIQLLKDLGFYRKSSPDALVPAEFKMAPARASGD 128
            K+ ++ Q++      RK+SPD  VPA  +      +GD
Sbjct: 1544 KKKDVYQVVGCDYECRKASPDVAVPANVRFLETEPAGD 1657


>gi|338240434|gb|AFNH01002949.1| Gregarina niphandrodes asmbl.3652,
            whole genome shotgun sequence
          Length = 5383

 Score = 25.4 bits (54), Expect = 5.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 91   KRSEIIQLLKDLGFYRKSSPDALVPAEFKMAPARASGD 128
            K+ ++ Q++      RK+SPD  VPA  +      +GD
Sbjct: 1813 KKKDVYQVVGCDYECRKASPDVAVPASVRFLETEPAGD 1926


>gi|338239239|gb|AFNH01003545.1| Gregarina niphandrodes asmbl.875,
            whole genome shotgun sequence
          Length = 1493

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 91   KRSEIIQLLKDLGFYRKSSPDALVPAEFKMAPARASGD 128
            K+ ++ Q++      RK SPD  VPA  +      +GD
Sbjct: 1446 KKKDVYQVVGCDYECRKGSPDVAVPANVRFLETEPAGD 1333


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.320    0.141    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,373,710
Number of Sequences: 3680
Number of extensions: 29493
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of query: 133
length of database: 5,120,956
effective HSP length: 84
effective length of query: 49
effective length of database: 4,811,836
effective search space: 235779964
effective search space used: 235779964
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)