TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ostreococcus lucimarinus
         (140 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.433 of Sphaeroforma arctica JP610                           30   1.3  
supercont1.173 of Sphaeroforma arctica JP610                           30   2.2  
supercont1.214 of Sphaeroforma arctica JP610                           29   2.8  
supercont1.161 of Sphaeroforma arctica JP610                           29   3.7  
supercont1.2 of Sphaeroforma arctica JP610                             28   4.8  
supercont1.9619 of Sphaeroforma arctica JP610                          28   6.3  
supercont1.915 of Sphaeroforma arctica JP610                           28   6.3  
supercont1.890 of Sphaeroforma arctica JP610                           28   8.2  

>supercont1.433 of Sphaeroforma arctica JP610
          Length = 73675

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = -3

Query: 3     STATTTRTTTRRRPARRVVAARVVAACVALARVARGTAGEGA 44
             +T TTT TTT   P R   AA   AA  A  +    TA  GA
Sbjct: 60815 TTPTTTTTTTADLPTRITAAAAAAAATAATPKSTGVTAATGA 60690


>supercont1.173 of Sphaeroforma arctica JP610
          Length = 125068

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 20/47 (42%), Positives = 20/47 (42%)
 Frame = -2

Query: 2      TSTATTTRTTTRRRPARRVVAARVVAACVALARVARGTAGEGAFARA 48
              T TAT T TTT    A     AR  AA  A A  A  T    A A A
Sbjct: 104307 THTATITTTTTATTRATARATARATAAATAAATAATTTTTAAAAATA 104167


>supercont1.214 of Sphaeroforma arctica JP610
          Length = 112581

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = -3

Query: 2     TSTATTTRTTTRRRPARRVVAARVVAACVALARVARGTA 40
             T+TAT T TTT R  A    +A V  A        RGTA
Sbjct: 56998 TTTATATTTTTTRYAATARYSAHVTGATTTPTSSTRGTA 56882


>supercont1.161 of Sphaeroforma arctica JP610
          Length = 130569

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 18/45 (40%), Positives = 19/45 (42%)
 Frame = +2

Query: 2    TSTATTTRTTTRRRPARRVVAARVVAACVALARVARGTAGEGAFA 46
            T+ ATTT TTT    A    AA   AA  A A     T    A A
Sbjct: 1235 TAAATTTATTTAAAAATTTAAAATAAAATATAATTTATTTATATA 1369


>supercont1.2 of Sphaeroforma arctica JP610
          Length = 348075

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -1

Query: 75     GGYGERVGVTWTPGHPPS 92
              GG G R GV WTPG  PS
Sbjct: 259077 GGRGWRAGVWWTPGTGPS 259024



 Score = 27.7 bits (60), Expect = 8.2
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 15/58 (25%)
 Frame = -1

Query: 6      TTTRTTTRRRPAR---------RVVAARVVAACVA------LARVARGTAGEGAFARA 48
              TT+  T+RRRPAR         R +A RV A C A      ++ V  G +G+    R+
Sbjct: 298608 TTSALTSRRRPARSAANHCLRPRSMAFRVCATCTAYSTSTSVSMVILGVSGDTRIVRS 298435


>supercont1.9619 of Sphaeroforma arctica JP610
          Length = 1049

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +1

Query: 2   TSTATTTRTTTRRRPARRVVAARVVAACVALARVARGTAG 41
           T+TATTT  TT          +   A C A AR A  T G
Sbjct: 292 TTTATTTTATTTTATTTTATTSTNAAICTARARGATRTIG 411


>supercont1.915 of Sphaeroforma arctica JP610
          Length = 31577

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 6/125 (4%)
 Frame = +3

Query: 4    TATTTRTTTRRRPARRVVAARVVAACVALARVARGTA------GEGAFARAQFQSCPGXK 57
            T  T     +  P  + ++A+ +AA  +LA    GT+      G G     +  + PG +
Sbjct: 7953 TGATLGARVKDEPMAKPLSAQELAA-QSLASAGYGTSTLNTNTGAGVGTNQRSTASPGPQ 8129

Query: 58   LNRLPEIKTFLKEVVEVGGYGERVGVTWTPGHPPSLHMQDERGNNVETAKLTSEWTVERV 117
               +    T          YG    VT  P HP   +       +      TS  T    
Sbjct: 8130 NTTMSTTYTTGATTASSSAYGSIPPVTAAPTHPTQAYTYTTTSTSTVPGTSTSANTNMNT 8309

Query: 118  ETYLN 122
            +T++N
Sbjct: 8310 DTHMN 8324


>supercont1.890 of Sphaeroforma arctica JP610
          Length = 33672

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 2     TSTATTTRTTTRRRPARRVVAARVVAACVA-LARVARGTAGE 42
             T+T TTT TTT         AA V A  +A +A + R   GE
Sbjct: 10437 TTTTTTTATTTTTATTITTAAAAVTAITIAVIAAIERAFKGE 10562


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.317    0.130    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,821,993
Number of Sequences: 15618
Number of extensions: 252164
Number of successful extensions: 1561
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of query: 140
length of database: 40,529,447
effective HSP length: 98
effective length of query: 42
effective length of database: 38,998,883
effective search space: 1637953086
effective search space used: 1637953086
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)