TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ostreococcus lucimarinus (140 letters) Database: G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|338240529|gb|AFNH01002901.1| Gregarina niphandrodes asmbl.360... 28 1.3 gi|338240471|gb|AFNH01002930.1| Gregarina niphandrodes asmbl.363... 27 1.7 gi|338241346|gb|AFNH01002492.1| Gregarina niphandrodes asmbl.322... 27 1.7 gi|338242515|gb|AFNH01001907.1| Gregarina niphandrodes asmbl.269... 27 2.3 gi|338240704|gb|AFNH01002814.1| Gregarina niphandrodes asmbl.352... 27 3.0 gi|338240951|gb|AFNH01002691.1| Gregarina niphandrodes asmbl.341... 27 3.0 gi|338242433|gb|AFNH01001948.1| Gregarina niphandrodes asmbl.272... 27 3.0 gi|338244949|gb|AFNH01000690.1| Gregarina niphandrodes asmbl.159... 26 3.9 gi|338239680|gb|AFNH01003326.1| Gregarina niphandrodes asmbl.678... 26 5.0 gi|338240485|gb|AFNH01002923.1| Gregarina niphandrodes asmbl.362... 26 5.0 gi|338240676|gb|AFNH01002828.1| Gregarina niphandrodes asmbl.354... 26 5.0 gi|338241434|gb|AFNH01002448.1| Gregarina niphandrodes asmbl.318... 26 5.0 gi|338244925|gb|AFNH01000702.1| Gregarina niphandrodes asmbl.160... 26 5.0 gi|338244937|gb|AFNH01000696.1| Gregarina niphandrodes asmbl.160... 26 5.0 gi|338241253|gb|AFNH01002540.1| Gregarina niphandrodes asmbl.327... 25 6.6 gi|338241656|gb|AFNH01002337.1| Gregarina niphandrodes asmbl.308... 25 6.6 gi|338242998|gb|AFNH01001666.1| Gregarina niphandrodes asmbl.246... 25 6.6 gi|338244923|gb|AFNH01000703.1| Gregarina niphandrodes asmbl.160... 25 6.6 gi|338240417|gb|AFNH01002958.1| Gregarina niphandrodes asmbl.366... 25 8.6 gi|338241159|gb|AFNH01002587.1| Gregarina niphandrodes asmbl.331... 25 8.6 gi|338243268|gb|AFNH01001531.1| Gregarina niphandrodes asmbl.234... 25 8.6 gi|338245735|gb|AFNH01000298.1| Gregarina niphandrodes asmbl.126... 25 8.6 >gi|338240529|gb|AFNH01002901.1| Gregarina niphandrodes asmbl.3608, whole genome shotgun sequence Length = 43886 Score = 27.7 bits (60), Expect = 1.3 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Frame = +1 Query: 3 STATTTRTTTRRRPARRVVAAR---VVAACVALARVARGTAGEGAFARA 48 ST T TTT P+RR V R VV +++ RG AG A A Sbjct: 9211 STHVGTTTTTDSGPSRRRVVRRRNEVVVTSPGRSKLVRGAAGAAATVAA 9357 >gi|338240471|gb|AFNH01002930.1| Gregarina niphandrodes asmbl.3634, whole genome shotgun sequence Length = 7082 Score = 27.3 bits (59), Expect = 1.7 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -2 Query: 1 MTSTATTTRTTTRRRPARRVVAARVVAA 28 MT ATT + TTR+ AR+ A RV+ A Sbjct: 5026 MTWKATTWKVTTRKVTARKAAAWRVMGA 4943 >gi|338241346|gb|AFNH01002492.1| Gregarina niphandrodes asmbl.3227, whole genome shotgun sequence Length = 3037 Score = 27.3 bits (59), Expect = 1.7 Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 6/43 (13%) Frame = -2 Query: 6 TTTRTTTRRRPARRVVAARVVAACV------ALARVARGTAGE 42 T R TTRR ARRV A RV A V ALAR + G+ Sbjct: 3012 TRRRVTTRRVTARRVTARRVTARRVTGRVDTALARHSSTRRGD 2884 >gi|338242515|gb|AFNH01001907.1| Gregarina niphandrodes asmbl.2690, whole genome shotgun sequence Length = 60929 Score = 26.9 bits (58), Expect = 2.3 Identities = 20/63 (31%), Positives = 26/63 (41%) Frame = +1 Query: 2 TSTATTTRTTTRRRPARRVVAARVVAACVALARVARGTAGEGAFARAQFQSCPGXKLNRL 61 T TT R TTRR AR R+ A C+A G G + Q +NRL Sbjct: 28591 TRRLTTRRLTTRRLAARYHPTRRLAARCLATDGWRTGLVGGTLMRQGTLQRL----MNRL 28758 Query: 62 PEI 64 ++ Sbjct: 28759 GQL 28767 >gi|338240704|gb|AFNH01002814.1| Gregarina niphandrodes asmbl.3529, whole genome shotgun sequence Length = 9123 Score = 26.6 bits (57), Expect = 3.0 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = -2 Query: 1 MTSTATTTRTTTRRRPARRVVAARV-VAACVALARVARGTAGEGAFARA 48 MTST++ + T RRR ++ RV + A + A ++R G A R+ Sbjct: 6635 MTSTSSVSVTN*RRRIRAKIQCTRVRLKAAIIQALISRAPVGSPAVGRS 6489 >gi|338240951|gb|AFNH01002691.1| Gregarina niphandrodes asmbl.3412, whole genome shotgun sequence Length = 39733 Score = 26.6 bits (57), Expect = 3.0 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Frame = +2 Query: 2 TSTATTTRTTTRRRPARRVVAARVVAACVALARVA-RGTAGEGAFARAQF----QSCPGX 56 +STA + +RR +RRV + RV + VA RVA R A + F S PG Sbjct: 16247 SSTAGSWLVASRRVASRRVASRRVASRRVASGRVASRRVASRRVASFFPFLDRGSSMPGA 16426 Query: 57 KLNRLPEIK 65 LP + Sbjct: 16427 SWRGLPRFR 16453 >gi|338242433|gb|AFNH01001948.1| Gregarina niphandrodes asmbl.2727, whole genome shotgun sequence Length = 16161 Score = 26.6 bits (57), Expect = 3.0 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%) Frame = -1 Query: 85 WTPGHPPSLHMQDERGNNVETAKL-----TSEWTVERVETYLNERGFYRPGQERET 135 WT PS QD++ +N+ K S W + NE G +RPG+ R T Sbjct: 14145 WTCLMRPS-KKQDKKTHNLAKTKFWQT*YKSSWRKKEPNGRRNEAGIFRPGRARWT 13981 >gi|338244949|gb|AFNH01000690.1| Gregarina niphandrodes asmbl.15999, whole genome shotgun sequence Length = 45124 Score = 26.2 bits (56), Expect = 3.9 Identities = 16/53 (30%), Positives = 19/53 (35%) Frame = -1 Query: 81 VGVTWTPGHPPSLHMQDERGNNVETAKLTSEWTVERVETYLNERGFYRPGQER 133 VG T PP LH Q + + T T R L+ G RP R Sbjct: 37363 VGGPQTTQQPPGLHFQHRKTTSTSTGTTTRPRARPRPRPMLSRTGTPRPWPRR 37205 >gi|338239680|gb|AFNH01003326.1| Gregarina niphandrodes asmbl.678, whole genome shotgun sequence Length = 3651 Score = 25.8 bits (55), Expect = 5.0 Identities = 19/52 (36%), Positives = 21/52 (40%) Frame = +1 Query: 2 TSTATTTRTTTRRRPARRVVAARVVAACVALARVARGTAGEGAFARAQFQSC 53 TS+ TTTRTTT R R AAR A G A +SC Sbjct: 1144 TSSTTTTRTTTTR--TARTHAARTHAPGTHALHTTTRHTSPGCVGPAHGRSC 1293 >gi|338240485|gb|AFNH01002923.1| Gregarina niphandrodes asmbl.3628, whole genome shotgun sequence Length = 30596 Score = 25.8 bits (55), Expect = 5.0 Identities = 14/36 (38%), Positives = 14/36 (38%) Frame = +1 Query: 2 TSTATTTRTTTRRRPARRVVAARVVAACVALARVAR 37 T T RTTTRR RR R A R R Sbjct: 19417 THRTPTRRTTTRRTTTRRTTTRRTTTRRTATCRTHR 19524 >gi|338240676|gb|AFNH01002828.1| Gregarina niphandrodes asmbl.3541, whole genome shotgun sequence Length = 15598 Score = 25.8 bits (55), Expect = 5.0 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = +2 Query: 123 ERGFYRPGQERETARVEL 140 ERGF+RP ++ E R+EL Sbjct: 5876 ERGFHRPAEDVEPRRLEL 5929 >gi|338241434|gb|AFNH01002448.1| Gregarina niphandrodes asmbl.3188, whole genome shotgun sequence Length = 22809 Score = 25.8 bits (55), Expect = 5.0 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = -1 Query: 9 RTTTRRRPARRVVAARVVAACVALAR 34 R RR ARRV A+RV A CV R Sbjct: 7383 RVRARRVRARRVRASRVRACCVRACR 7306 >gi|338244925|gb|AFNH01000702.1| Gregarina niphandrodes asmbl.16008, whole genome shotgun sequence Length = 13460 Score = 25.8 bits (55), Expect = 5.0 Identities = 10/15 (66%), Positives = 13/15 (86%) Frame = -3 Query: 79 ERVGVTWTPGHPPSL 93 E++GVT +P HPPSL Sbjct: 6402 EKLGVTDSPQHPPSL 6358 >gi|338244937|gb|AFNH01000696.1| Gregarina niphandrodes asmbl.16002, whole genome shotgun sequence Length = 25683 Score = 25.8 bits (55), Expect = 5.0 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = -3 Query: 16 PARRVVAARVVAACVALAR-VARGTAGEGAFARAQFQSCP 54 P R+ R V AC+ L + RG +G + R ++ CP Sbjct: 20296 PRERLGMCRCVVACLPLVLCIWRGHSGHKTWPRVPWRECP 20177 >gi|338241253|gb|AFNH01002540.1| Gregarina niphandrodes asmbl.3271, whole genome shotgun sequence Length = 14612 Score = 25.4 bits (54), Expect = 6.6 Identities = 15/45 (33%), Positives = 19/45 (42%) Frame = -3 Query: 2 TSTATTTRTTTRRRPARRVVAARVVAACVALARVARGTAGEGAFA 46 T+T TTT TTR + + A A V G+A G A Sbjct: 1566 TTTTTTTPGTTRPKTTATTITATTSAPAKNNTAVVVGSASAGGLA 1432 >gi|338241656|gb|AFNH01002337.1| Gregarina niphandrodes asmbl.3083, whole genome shotgun sequence Length = 53849 Score = 25.4 bits (54), Expect = 6.6 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = +2 Query: 20 VVAARVVAACVALARVARGTAGEGAF 45 V A RV A VA RVA G G+F Sbjct: 22214 VAAGRVAAGRVAAGRVAAGRVATGSF 22291 >gi|338242998|gb|AFNH01001666.1| Gregarina niphandrodes asmbl.2469, whole genome shotgun sequence Length = 12895 Score = 25.4 bits (54), Expect = 6.6 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +1 Query: 3 STATTTRTTTRRRPARRVVAARVVAA 28 S+A +TTT R RRVV R AA Sbjct: 9049 SSALPGQTTTARAATRRVVTGRAAAA 9126 >gi|338244923|gb|AFNH01000703.1| Gregarina niphandrodes asmbl.16009, whole genome shotgun sequence Length = 21887 Score = 25.4 bits (54), Expect = 6.6 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 Query: 71 VVEVGGYGERVGVTWTPGHP 90 VV + GYG+RV + W P P Sbjct: 921 VVLLRGYGDRVVIAWYPWSP 980 >gi|338240417|gb|AFNH01002958.1| Gregarina niphandrodes asmbl.3660, whole genome shotgun sequence Length = 18602 Score = 25.0 bits (53), Expect = 8.6 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = +3 Query: 9 RTTTRRRPARRVVAAR--VVAACVALARVARGTAGEG 43 +T+ R+PARR VA R + C A R+ R +G Sbjct: 13155 QTSQLRKPARRTVAPRRSRTSLCFARPRIHRSRDSDG 13265 >gi|338241159|gb|AFNH01002587.1| Gregarina niphandrodes asmbl.3314, whole genome shotgun sequence Length = 19756 Score = 25.0 bits (53), Expect = 8.6 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +1 Query: 7 TTRTTTRRRPARRVVAARVVAAC 29 +TR TRR PARR AA + C Sbjct: 14320 STREKTRRAPARRRAAASLEWCC 14388 >gi|338243268|gb|AFNH01001531.1| Gregarina niphandrodes asmbl.2344, whole genome shotgun sequence Length = 3682 Score = 25.0 bits (53), Expect = 8.6 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 7/36 (19%) Frame = +1 Query: 46 ARAQFQSCP-------GXKLNRLPEIKTFLKEVVEV 74 ARA F+SCP G +RLPE + +L+ +V Sbjct: 670 ARADFRSCPWNSLYLAGLVCSRLPEHQGWLRAFADV 777 >gi|338245735|gb|AFNH01000298.1| Gregarina niphandrodes asmbl.1266, whole genome shotgun sequence Length = 1089 Score = 25.0 bits (53), Expect = 8.6 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -2 Query: 2 TSTATTTRTTTRRRPARR 19 TST+T +RTT+ RPA R Sbjct: 425 TSTSTVSRTTSISRPAAR 372 Database: G.niphandrodes/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.317 0.130 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,169,547 Number of Sequences: 3680 Number of extensions: 53574 Number of successful extensions: 571 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 501 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 557 length of query: 140 length of database: 5,120,956 effective HSP length: 85 effective length of query: 55 effective length of database: 4,808,156 effective search space: 264448580 effective search space used: 264448580 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)