TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= T.pseudonana 2 (250 letters) Database: P.capsici/genome.fa 917 sequences; 64,023,748 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PHYCAscaffold_19 35 0.076 PHYCAscaffold_15 32 0.64 PHYCAscaffold_44 32 0.84 PHYCAscaffold_98 31 1.4 PHYCAscaffold_90 31 1.4 PHYCAscaffold_20 31 1.4 PHYCAscaffold_18 31 1.4 PHYCAscaffold_2 31 1.4 PHYCAscaffold_29 31 1.9 PHYCAscaffold_22 31 1.9 PHYCAscaffold_12 30 3.2 PHYCAscaffold_1 30 3.2 PHYCAscaffold_143 30 4.2 PHYCAscaffold_113 29 5.4 PHYCAscaffold_87 29 5.4 PHYCAscaffold_81 29 5.4 PHYCAscaffold_55 29 5.4 PHYCAscaffold_39 29 5.4 PHYCAscaffold_7 29 5.4 PHYCAscaffold_6 29 5.4 PHYCAscaffold_279 29 7.1 PHYCAscaffold_79 29 7.1 PHYCAscaffold_36 29 7.1 PHYCAscaffold_34 29 7.1 PHYCAscaffold_14 29 7.1 >PHYCAscaffold_19 Length = 944885 Score = 35.4 bits (80), Expect = 0.076 Identities = 37/136 (27%), Positives = 53/136 (38%), Gaps = 12/136 (8%) Frame = +1 Query: 56 RRQTRVDEHHRTNQSQVVSQQVASRSASYKIRGDGDVDRVTW--------VCRRSRPGSV 107 RRQ V R ++ + + ASR + + D DR +W V R R G Sbjct: 124984 RRQRYVAARRRRTRTALQRDRPASRHTTAAAQRDRPTDRASWTGIGSSKRVARPKRNGPA 125163 Query: 108 GFTCPSSHVFVFSLVILDSSAAAIHSKMLSSASRILFLLATILALTTATLHGR----IES 163 G T +H L AA+ ++ SSA R LA + H R I+ Sbjct: 125164 GATIARAH--------LQQHGAAVAARAASSAHRHTADLARRSRTSRQADHTRRPPVIDP 125319 Query: 164 CSGXKLNKLPVLKSFL 179 SG + LP++K L Sbjct: 125320 PSGVRNTTLPLVKLLL 125367 Score = 31.6 bits (70), Expect = 1.1 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 8/94 (8%) Frame = +1 Query: 56 RRQTRVDEHHRTNQSQVVSQQVASRSASYKIRGDGDVDRVTW--------VCRRSRPGSV 107 RRQ V R ++ + + ASR + + D DR +W V R R G Sbjct: 118069 RRQRYVAARRRRTRTALQRDRPASRHTTAAAQRDRPTDRASWTGIGSSKRVARPKRNGPA 118248 Query: 108 GFTCPSSHVFVFSLVILDSSAAAIHSKMLSSASR 141 G T +H L AA+ ++ SSA R Sbjct: 118249 GATIARAH--------LQQHGAAVAARAASSAHR 118326 Score = 31.6 bits (70), Expect = 1.1 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 8/94 (8%) Frame = +1 Query: 56 RRQTRVDEHHRTNQSQVVSQQVASRSASYKIRGDGDVDRVTW--------VCRRSRPGSV 107 RRQ V R ++ + + ASR + + D DR +W V R R G Sbjct: 120040 RRQRYVAARRRRTRTALQRDRPASRHTTAAAQRDRPTDRASWTGIGSSKRVARPKRNGPA 120219 Query: 108 GFTCPSSHVFVFSLVILDSSAAAIHSKMLSSASR 141 G T +H L AA+ ++ SSA R Sbjct: 120220 GATIARAH--------LQQHGAAVAARAASSAHR 120297 Score = 31.6 bits (70), Expect = 1.1 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 8/94 (8%) Frame = +1 Query: 56 RRQTRVDEHHRTNQSQVVSQQVASRSASYKIRGDGDVDRVTW--------VCRRSRPGSV 107 RRQ V R ++ + + ASR + + D DR +W V R R G Sbjct: 121276 RRQRYVAARRRRTRTALQRDRPASRHTTAAAQRDRPTDRASWTGIGSSKRVARPKRNGPA 121455 Query: 108 GFTCPSSHVFVFSLVILDSSAAAIHSKMLSSASR 141 G T +H L AA+ ++ SSA R Sbjct: 121456 GATIARAH--------LQQHGAAVAARAASSAHR 121533 Score = 31.6 bits (70), Expect = 1.1 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 8/94 (8%) Frame = +3 Query: 56 RRQTRVDEHHRTNQSQVVSQQVASRSASYKIRGDGDVDRVTW--------VCRRSRPGSV 107 RRQ V R ++ + + ASR + + D DR +W V R R G Sbjct: 126219 RRQRYVAARRRRTRTALQRDRPASRHTTAAAQRDRPTDRASWTGIGSSKRVARPKRNGPT 126398 Query: 108 GFTCPSSHVFVFSLVILDSSAAAIHSKMLSSASR 141 G T +H L AA+ ++ SSA R Sbjct: 126399 GATIARAH--------LQQHGAAVAARAASSAHR 126476 Score = 31.6 bits (70), Expect = 1.1 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 8/94 (8%) Frame = +3 Query: 56 RRQTRVDEHHRTNQSQVVSQQVASRSASYKIRGDGDVDRVTW--------VCRRSRPGSV 107 RRQ V R ++ + + ASR + + D DR +W V R R G Sbjct: 127455 RRQRYVAARRRRTRTALQRDRPASRHTTAAAQRDRPTDRASWTGIGSSKRVARPKRNGPA 127634 Query: 108 GFTCPSSHVFVFSLVILDSSAAAIHSKMLSSASR 141 G T +H L AA+ ++ SSA R Sbjct: 127635 GATIARAH--------LQQHGAAVAARAASSAHR 127712 Score = 31.2 bits (69), Expect = 1.4 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 8/94 (8%) Frame = +1 Query: 56 RRQTRVDEHHRTNQSQVVSQQVASRSASYKIRGDGDVDRVTW--------VCRRSRPGSV 107 RRQ V R ++ + + ASR + + D DR +W V R R G Sbjct: 122512 RRQRYVAARSRRTRTALQRDRPASRHTTAAAQRDRPTDRASWTGIGSSKRVARPKRNGPA 122691 Query: 108 GFTCPSSHVFVFSLVILDSSAAAIHSKMLSSASR 141 G T +H L AA+ ++ SSA R Sbjct: 122692 GATIARAH--------LQQHGAAVAARAASSAHR 122769 Score = 31.2 bits (69), Expect = 1.4 Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 13/96 (13%) Frame = -2 Query: 35 RDNSWTLPPPPPPKLEGEPTDRRQT------RVDEHHRTNQSQVV---SQQVASRSASYK 85 R+N PPPPP P+ +T RV RT Q + V +Q + A+YK Sbjct: 614869 RENVGPSDPPPPPATAWHPSHGMKTMLPKLPRVGARRRTAQDKTVAVGTQVIIEDMATYK 614690 Query: 86 I---RGDGDVDRVTWVCR-RSRPGSVGFTCPSSHVF 117 + G D WV R R GS CP F Sbjct: 614689 LFKANHAGPADTSYWVIRARVLAGS----CPIGPAF 614594 Score = 30.4 bits (67), Expect = 2.4 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 8/85 (9%) Frame = +3 Query: 56 RRQTRVDEHHRTNQSQVVSQQVASRSASYKIRGDGDVDRVTW--------VCRRSRPGSV 107 RRQ V R ++ + + ASR + + D DR +W V R R G Sbjct: 128691 RRQRYVAARRRRTRTALQRDRPASRHTTAAAQRDRPTDRASWTGIGSSKRVARPKRNGPA 128870 Query: 108 GFTCPSSHVFVFSLVILDSSAAAIH 132 G T +H+ + +A++ H Sbjct: 128871 GATIARAHLQQHGAAVAARAASSAH 128945 >PHYCAscaffold_15 Length = 1032281 Score = 32.3 bits (72), Expect = 0.64 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = -3 Query: 42 PPPPPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQQVASRS 81 PPPPPP G P R D ++ T++ + Q S+S Sbjct: 460761 PPPPPPLRNGNPEQRYAPTPDRNYDTSREESYGYQQPSKS 460642 >PHYCAscaffold_44 Length = 536020 Score = 32.0 bits (71), Expect = 0.84 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Frame = -3 Query: 9 SDGRAGDRKQGTKQVQSPFFFNKGQPRDNS--WTLPPPPPPKL 49 +DG A ++ Q +++Q P F +G PR WT P P PP+L Sbjct: 153854 ADGNASEQ-Q*QREMQRPRGFRRGLPRVRGM*WTRPSPQPPQL 153729 >PHYCAscaffold_98 Length = 130742 Score = 31.2 bits (69), Expect = 1.4 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = +3 Query: 11 GRAGDRKQGTKQVQSPFFFNKGQPRDNSWTLPPPPPPKLE-GEPTDRRQTRVDEHHRTN 68 G GD K T Q + P ++G P W PP P E +P RR HHRT+ Sbjct: 61410 GSRGDLKPETAQEKRPLLGHRG-P*RRLWLRSPPSTPHSEPDQPQQRRAGVPFFHHRTS 61583 >PHYCAscaffold_90 Length = 152720 Score = 31.2 bits (69), Expect = 1.4 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%) Frame = +1 Query: 34 PRDNS---WTLPPPPPPKLEGEPTDRRQTRVDEHHRT 67 PR S W+ PPPPPP L + +RR+ +V HR+ Sbjct: 61225 PRSGSTITWSPPPPPPPPLVRK--ERRRVQVPRPHRS 61329 >PHYCAscaffold_20 Length = 899172 Score = 31.2 bits (69), Expect = 1.4 Identities = 11/12 (91%), Positives = 11/12 (91%) Frame = -3 Query: 38 SWTLPPPPPPKL 49 SWTLPPPPPP L Sbjct: 130132 SWTLPPPPPPPL 130097 >PHYCAscaffold_18 Length = 984210 Score = 31.2 bits (69), Expect = 1.4 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 12/58 (20%) Frame = -1 Query: 41 LPPPPPPK-----------LEGEPTDRRQTRVDEHHRTNQSQ-VVSQQVASRSASYKI 86 LPPPPPP + + T ++ TR+ +HR SQ QV +R+ S I Sbjct: 925806 LPPPPPPSPMLPPMLPRPPMYSKRTQKQNTRIKPYHRLKPSQRYPDDQVRTRAKSVDI 925633 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Frame = -1 Query: 42 PPPPPPKLEGEPTDRRQTRV--DEHHRTNQSQVVSQQVASRSA 82 PPPPPP + P R + V E HR N SQ +++ RS+ Sbjct: 815310 PPPPPPLAKRRPILHRLSNVTPKERHRLNVSQGQARRRCQRSS 815182 >PHYCAscaffold_2 Length = 1925921 Score = 31.2 bits (69), Expect = 1.4 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 9/75 (12%) Frame = +2 Query: 1 MFVDGQRTSDG----RAGDRKQGTKQVQSPFFFNKGQPRDNSWTLPPPPPP-----KLEG 51 + +DG TS RA R + +P F PR NS PPPPPP + Sbjct: 480386 LLLDGITTSAQTTV*RAAIRTRSNTTCSNPITFRLFSPRSNS---PPPPPPPSY*SRAAT 480556 Query: 52 EPTDRRQTRVDEHHR 66 P +RV H R Sbjct: 480557 SPRPTTPSRVATHSR 480601 Score = 28.9 bits (63), Expect = 7.1 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -1 Query: 29 FNKGQPRDNSWTLPPPPPPK 48 F G PR N+ ++PPPPPP+ Sbjct: 579464 FQPGHPRTNA-SVPPPPPPR 579408 >PHYCAscaffold_29 Length = 707326 Score = 30.8 bits (68), Expect = 1.9 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Frame = -2 Query: 3 VDGQRTSDGRAGDRKQGTKQVQSPFFFNKGQPRDNSWTLPP--PPPPKLEGEPTDRRQTR 60 V ++ + R +R+ G K S N+ +P + + + P P PPK G+ + R Sbjct: 692697 VTSEQKGELRRKNREDGYKPPSSEP--NQAEPPEKTRQVRPQEPAPPKRPGKVYSSEEKR 692524 Query: 61 VDEHHRTNQSQVVSQQVAS 79 V H+ + + QQVA+ Sbjct: 692523 VKLHYSNQEQSRLQQQVAA 692467 >PHYCAscaffold_22 Length = 843021 Score = 30.8 bits (68), Expect = 1.9 Identities = 14/48 (29%), Positives = 30/48 (62%) Frame = -1 Query: 92 VDRVTWVCRRSRPGSVGFTCPSSHVFVFSLVILDSSAAAIHSKMLSSA 139 ++ ++C R + + F C VF+FS V+ ++S AA++S+ ++S+ Sbjct: 788916 IESERFLCIRDKSAN-SFRCFKLSVFIFSTVVANASLAAVNSRTVNSS 788776 >PHYCAscaffold_12 Length = 1145657 Score = 30.0 bits (66), Expect = 3.2 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = -3 Query: 52 EPTDRRQTRVDEHHRTNQSQVVSQQVASRSASYKIRG--DGDVDRVTWVCR 100 +P D R TR D HR +V S Q +R+AS+ I G G+ D + CR Sbjct: 790872 QPRDERPTRGDSQHR----EVGSSQTFARNASHSIGGVCHGEGDGNSTHCR 790732 >PHYCAscaffold_1 Length = 2170955 Score = 30.0 bits (66), Expect = 3.2 Identities = 19/53 (35%), Positives = 29/53 (54%) Frame = -3 Query: 87 RGDGDVDRVTWVCRRSRPGSVGFTCPSSHVFVFSLVILDSSAAAIHSKMLSSA 139 R +G+V R +CRR P +V T P++ V F+ ++D S+ S SSA Sbjct: 13719 RREGEV-R*PGLCRRQSPSTVKTTAPTNGVSSFTKCLVDPSSVGRSSSSGSSA 13564 >PHYCAscaffold_143 Length = 25967 Score = 29.6 bits (65), Expect = 4.2 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = +3 Query: 42 PPPPPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQQVASRSASYKI 86 PPPP K+E P ++++ R + H + ++ QV S K+ Sbjct: 4200 PPPPALKIEMSPEEQKKRRERDFHFLRELRIFLSQVLDYCYSQKV 4334 >PHYCAscaffold_113 Length = 80212 Score = 29.3 bits (64), Expect = 5.4 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%) Frame = -2 Query: 20 TKQVQSPFFFNKGQPRDNSWTLPPPPPP----KLEGEPT 54 T++ +P + K +P W PPPPPP +L PT Sbjct: 28875 TRRRTTPTPYRKPKPFGGIWGSPPPPPPPPLSRLMSSPT 28759 >PHYCAscaffold_87 Length = 182599 Score = 29.3 bits (64), Expect = 5.4 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +3 Query: 33 QPRDNSWTLPPPPPPKLEGEPTDRRQTRVDEHH 65 +PR+ WT P PP + EG + + T ++ HH Sbjct: 51300 KPRELRWT--PAPPVECEGA*SAHKTTEIENHH 51392 >PHYCAscaffold_81 Length = 202973 Score = 29.3 bits (64), Expect = 5.4 Identities = 19/67 (28%), Positives = 28/67 (41%) Frame = -3 Query: 10 DGRAGDRKQGTKQVQSPFFFNKGQPRDNSWTLPPPPPPKLEGEPTDRRQTRVDEHHRTNQ 69 D +G + ++ PF P + TLP PK P DRR T +EH ++ Sbjct: 79836 DSGSGSFRGAPFTLEIPFIMVNSTPARRATTLPDDHEPK----PVDRRPTVPEEHDYDSK 79669 Query: 70 SQVVSQQ 76 SQ+ Sbjct: 79668 GPEPSQK 79648 >PHYCAscaffold_55 Length = 463907 Score = 29.3 bits (64), Expect = 5.4 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +2 Query: 37 NSWTLPPPPPPKLEGEPTD 55 NS T PPPPPP G+ +D Sbjct: 361253 NSMTPPPPPPPPAPGDDSD 361309 >PHYCAscaffold_39 Length = 591971 Score = 29.3 bits (64), Expect = 5.4 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%) Frame = -2 Query: 42 PPPPPPK----LEGEPTDRRQTRVDEHHRTNQSQVVS 74 PPPPPPK L G + R R +H T ++ VS Sbjct: 28582 PPPPPPKQRVQLPGSTGEHRPRRSTQHTGTRRNACVS 28472 >PHYCAscaffold_7 Length = 1368812 Score = 29.3 bits (64), Expect = 5.4 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = +1 Query: 30 NKGQPRDNSWTLPPPPPPKLEGEPTDRRQTRVDEHHRTNQ 69 N Q SW +PP PP E +Q +HHR Q Sbjct: 617185 NSSQ*STASWLVPPLPPVPPESWKEPSQQLCTHQHHRNQQ 617304 >PHYCAscaffold_6 Length = 1423605 Score = 29.3 bits (64), Expect = 5.4 Identities = 11/50 (22%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = -3 Query: 27 FFFNKGQPRDNSWTLPPPPPPKLEGEPTDRRQT---RVDEHHRTNQSQVV 73 + N + + + + PPPPPP+++ + ++ T ++ +H R+ Q++ Sbjct: 61288 YLLNGFEKKSSLRSSPPPPPPQIQADQPQKKPTNDSKIIDHQRSVTEQLM 61139 Score = 28.5 bits (62), Expect = 9.3 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 3/32 (9%) Frame = -2 Query: 32 GQPRDNSWTL---PPPPPPKLEGEPTDRRQTR 60 G PR SW L P PPP G P DR +R Sbjct: 491870 GSPRAGSWFLEEKPHPPPLGPPGAPADRDASR 491775 >PHYCAscaffold_279 Length = 7200 Score = 28.9 bits (63), Expect = 7.1 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -1 Query: 18 QGTKQVQSPFFFNKGQPRDNSWTLPPPPPP 47 +G K+ P +G P D T PPPPPP Sbjct: 3507 RGKKKWGWPIRLPRGGPIDQRGTPPPPPPP 3418 >PHYCAscaffold_79 Length = 222129 Score = 28.9 bits (63), Expect = 7.1 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 7/46 (15%) Frame = -1 Query: 25 SPFFFNKGQPRDNSWTLPPPP-------PPKLEGEPTDRRQTRVDE 63 SP + + R +WTLPPPP PP LE R+ R E Sbjct: 61278 SPTRRKRRRRRSRTWTLPPPPTLRLWASPPLLEVRKKTTRKRRRKE 61141 >PHYCAscaffold_36 Length = 679425 Score = 28.9 bits (63), Expect = 7.1 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +3 Query: 43 PPPPPKLEGEPTDRRQTRVDEHHRTNQSQ 71 PPPPP+L P R TR D R++ ++ Sbjct: 610110 PPPPPELRPCPQPTRSTRTDRLPRSHPAE 610196 Score = 28.5 bits (62), Expect = 9.3 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -2 Query: 43 PPPPPKLEGEPTDRRQTRVDEHHRTNQSQ 71 PPPPP+L P R TR D R++ ++ Sbjct: 611567 PPPPPELRPCPQPTRATRTDRLPRSHPAE 611481 >PHYCAscaffold_34 Length = 622686 Score = 28.9 bits (63), Expect = 7.1 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -2 Query: 24 QSPFFFNKGQPRDNSWTLPPPPPP 47 Q+P +F G + + PPPPPP Sbjct: 229493 QNPMYFPPGAMQPRGYPQPPPPPP 229422 >PHYCAscaffold_14 Length = 1100894 Score = 28.9 bits (63), Expect = 7.1 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +3 Query: 31 KGQPRDNSWTLPPPPPPKLE 50 +G PR T PPPPPP L+ Sbjct: 778755 RGSPRSPLATPPPPPPPSLQ 778814 Database: P.capsici/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 64,023,748 Number of sequences in database: 917 Lambda K H 0.318 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,051,045 Number of Sequences: 917 Number of extensions: 400175 Number of successful extensions: 4201 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 195 Number of HSP's successfully gapped in prelim test: 116 Number of HSP's that attempted gapping in prelim test: 1935 Number of HSP's gapped (non-prelim): 3352 length of query: 250 length of database: 21,341,249 effective HSP length: 102 effective length of query: 148 effective length of database: 21,247,715 effective search space: 3144661820 effective search space used: 3144661820 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 62 (28.5 bits)