TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= T.pseudonana 2 (250 letters) Database: D.fasciculatum/genome.fa 25 sequences; 31,019,208 total letters Searching.........................done Score E Sequences producing significant alignments: (bits) Value gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced ... 32 0.32 gi|328876102|gb|GL883006.1| Dictyostelium fasciculatum unplaced ... 32 0.55 gi|328868227|gb|GL883021.1| Dictyostelium fasciculatum unplaced ... 31 0.94 gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced ... 30 1.6 gi|328870595|gb|GL883016.1| Dictyostelium fasciculatum unplaced ... 29 3.6 gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced ... 29 3.6 gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ... 29 3.6 gi|328869574|gb|GL883020.1| Dictyostelium fasciculatum unplaced ... 28 4.7 gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced ... 28 7.9 gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced ... 28 7.9 >gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EU5ZYIE02H8LDV-5, whole genome shotgun sequence Length = 1919465 Score = 32.3 bits (72), Expect = 0.32 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%) Frame = +3 Query: 2 FVDGQRTSDGRAGDRKQGTKQVQSPFFF---NKGQPRDNSWTLPPPPPPKLEGEPTDRRQ 58 F++G ++G + + + S F N Q D + TLP PPPP PT +Q Sbjct: 161205 FLNGASGNNGTSNNNTNVRPSITSTDLFSNPNHSQLVDGASTLPLPPPP-TTSTPTTLKQ 161381 Query: 59 TRVDEHHRTNQSQVVSQQVA 78 +V T++S +V+ +A Sbjct: 161382 QQVPPPQTTSKSFMVAPVMA 161441 Score = 29.3 bits (64), Expect = 2.7 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = -1 Query: 143 LFLLATILALTTATLHGRIESCSGXKLNKLPVLKSF 178 LFLL+ IL TLH I S S LNK ++ +F Sbjct: 990782 LFLLSVILLTVATTLHSSINSISVFFLNKSLIVGNF 990675 Score = 29.3 bits (64), Expect = 2.7 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 3/74 (4%) Frame = -1 Query: 17 KQGTKQVQSPFFFNKGQPRDNSWTLPPPPPPKLEGEPTDRRQTRV---DEHHRTNQSQVV 73 K T Q P K QP ++ P PPPP P RQ+ DE R SQ+ Sbjct: 538397 KPPTSQPPPPPMSAKPQPPPPAFGKPQPPPPTSRPPPPPSRQSSTPNNDEELRHALSQIQ 538218 Query: 74 SQQVASRSASYKIR 87 + A+ +++ Sbjct: 538217 DLENQLNRANQRVK 538176 Score = 29.3 bits (64), Expect = 2.7 Identities = 17/42 (40%), Positives = 19/42 (45%) Frame = -2 Query: 36 DNSWTLPPPPPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQQV 77 DNS L P PPP L G P R+ HH QV + V Sbjct: 442936 DNS-PLEPSPPPALAGSPVHRQPLITRGHHGRVDEQVEPEVV 442814 Score = 27.7 bits (60), Expect = 7.9 Identities = 16/66 (24%), Positives = 30/66 (45%) Frame = -1 Query: 16 RKQGTKQVQSPFFFNKGQPRDNSWTLPPPPPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQ 75 ++Q ++ SP +++ Q S PPPPPP + + T + ++ N + S Sbjct: 756761 QQQQQQKTNSPVQYSQSQ---YSNVTPPPPPPPISHPLSTNTNTNTNTNNNINNNLNTSS 756591 Query: 76 QVASRS 81 +S S Sbjct: 756590 SSSSTS 756573 >gi|328876102|gb|GL883006.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-b-205a01.r1-3, whole genome shotgun sequence Length = 2485436 Score = 31.6 bits (70), Expect = 0.55 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 9/83 (10%) Frame = +2 Query: 21 KQVQSPFFFNKGQPRDNSWT-----LPPPPPPKLEGEPTDRRQTR----VDEHHRTNQSQ 71 ++ + FFF+ S + LPPPPPP P D ++ ++ R Q+ Sbjct: 2288129 RKTAADFFFSTASSASTSSSSLSEELPPPPPPPPPSVPLDPKEAEEKRLLERKKRIEQAL 2288308 Query: 72 VVSQQVASRSASYKIRGDGDVDR 94 + Q+ AS S+ D D ++ Sbjct: 2288309 ISYQRDASSSSEEDDTSDDDDEK 2288377 Score = 31.2 bits (69), Expect = 0.72 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 4/50 (8%) Frame = -2 Query: 38 SWTLPPPPPPKLEGE----PTDRRQTRVDEHHRTNQSQVVSQQVASRSAS 83 ++T PP PPK + E P +R+ +V E+ + N ++ + V+S S+S Sbjct: 1390837 TYTNQPPAPPKKKQEFKEKPKNRKDKKVPEYRKLNFAEKKEETVSSSSSS 1390688 Score = 29.3 bits (64), Expect = 2.7 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 2/79 (2%) Frame = -2 Query: 7 RTSDGRAGDRKQ--GTKQVQSPFFFNKGQPRDNSWTLPPPPPPKLEGEPTDRRQTRVDEH 64 ++S G K + Q QSP +S + PPPPPP +P Q + Sbjct: 1380916 KSSSSSVGSNKSYSSSPQSQSPQSSVTKDEVSSSVSFPPPPPP--PPQPQHPNQFFISRP 1380743 Query: 65 HRTNQSQVVSQQVASRSAS 83 H SQ S Q + S++ Sbjct: 1380742 HSNTLSQYPSYQGTNNSSN 1380686 Score = 28.1 bits (61), Expect = 6.1 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = -3 Query: 41 LPPPPPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQQVASRSASYK 85 +PPPPPP + D+ T E + + SQ+ +Q+ +++ K Sbjct: 2204898 IPPPPPPPSNNKHFDKMDT---ESNMVDDSQIENQEKYKNNSNSK 2204773 Score = 28.1 bits (61), Expect = 6.1 Identities = 9/12 (75%), Positives = 10/12 (83%) Frame = -1 Query: 37 NSWTLPPPPPPK 48 N WT PPPPPP+ Sbjct: 1686680 N*WTTPPPPPPR 1686645 Score = 28.1 bits (61), Expect = 6.1 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +1 Query: 33 QPRDNSWTLPPPPPPKL 49 Q R ++WTLPPP P +L Sbjct: 871924 QARRSTWTLPPPTPTRL 871974 Score = 27.7 bits (60), Expect = 7.9 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = +1 Query: 36 DNSW-TLPPPPPPKLEGEPTDRRQTRVDEHHRTNQS 70 + +W T PPPP PK+ + D D+ H N + Sbjct: 1054846 EGNWDTPPPPPHPKILDKDIDYSNPNRDDDHNNNNN 1054953 >gi|328868227|gb|GL883021.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_ET2XIPL01COFD4-5, whole genome shotgun sequence Length = 3468650 Score = 30.8 bits (68), Expect = 0.94 Identities = 15/56 (26%), Positives = 24/56 (42%) Frame = -2 Query: 16 RKQGTKQVQSPFFFNKGQPRDNSWTLPPPPPPKLEGEPTDRRQTRVDEHHRTNQSQ 71 +K+ S N N + + PPPP + PTD+ T + ++ N SQ Sbjct: 27706 KKESHNITNSKLDENNHSSPTNFYKMDQPPPPPMSRSPTDKSSTNNNNNNNLNFSQ 27539 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = -1 Query: 7 RTSDGRAGDRKQGTKQV-QSPFFFNKGQPRDNSWTLPPPPP 46 RT+ R + + +SP +FNK NS TL PPP Sbjct: 3363137 RTNSPRTSPSSSSSTSIPKSPIYFNKNIMIPNSPTLSSPPP 3363015 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/69 (21%), Positives = 25/69 (36%) Frame = -1 Query: 3 VDGQRTSDGRAGDRKQGTKQVQSPFFFNKGQPRDNSWTLPPPPPPKLEGEPTDRRQTRVD 62 VD R + DR + + + RD LPPPPPP + + + Sbjct: 1078997 VDNNRRDNNNRYDRDRRDDRDNRGGYDRNNNNRDRRDPLPPPPPPPPQQSSSSSSSSTTS 1078818 Query: 63 EHHRTNQSQ 71 R+ + + Sbjct: 1078817 GEKRSREEE 1078791 >gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EUAJFUG02HR96I-5, whole genome shotgun sequence Length = 3408800 Score = 30.0 bits (66), Expect = 1.6 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +1 Query: 30 NKGQPRDNSWTLPPPPPP 47 N+G RD S LPPPPPP Sbjct: 883423 NQGHQRDYSNPLPPPPPP 883476 Score = 29.6 bits (65), Expect = 2.1 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +1 Query: 30 NKGQPRDNSWTLPPPPPPKLEGEP 53 N G +NS PPPPPP ++ P Sbjct: 3396652 NNGNNNNNSMPPPPPPPPMIDDMP 3396723 Score = 28.5 bits (62), Expect = 4.7 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -1 Query: 31 KGQPRDNSWTLPPPPPP 47 +G PR+ WTLPP P P Sbjct: 1959128 RGVPRNQHWTLPPQPIP 1959078 Score = 28.1 bits (61), Expect = 6.1 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +1 Query: 34 PRDNSWTLPPPPPPKLE 50 P +S LPPPPPP+L+ Sbjct: 143131 PHQSSPPLPPPPPPRLQ 143181 Score = 28.1 bits (61), Expect = 6.1 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -3 Query: 27 FFFNKGQPRDNSWTLPPPPPP 47 FFF+K + LPPPPPP Sbjct: 1710219 FFFSKPNCQSAEIALPPPPPP 1710157 >gi|328870595|gb|GL883016.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-b-143d02.r1-5, whole genome shotgun sequence Length = 656888 Score = 28.9 bits (63), Expect = 3.6 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +2 Query: 83 SYKIRGDGDVDRVTWVCRRSRPGSVGFTCPSSHV-FVFSLVILDS 126 +Y R D VD V VC SRP F C + H + +++IL S Sbjct: 293456 AY*RRDDEVVDPVLSVCCSSRPSESWFPCATQHYNYTMTILILQS 293590 Score = 28.1 bits (61), Expect = 6.1 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Frame = -2 Query: 23 VQSPFFFNKGQPR--DNSWTLPPPPPPKLEGEPTDRRQTRVDE 63 VQ+ F N GQ S T PPP PPK + + +VDE Sbjct: 342763 VQNTVFLNNGQLDLVPISTTPPPPEPPKPKAKDAAAGDKKVDE 342635 >gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_ET2XIPL01CNAVH-3, whole genome shotgun sequence Length = 1908399 Score = 28.9 bits (63), Expect = 3.6 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Frame = +3 Query: 42 PPPPPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQQVASRSASY--KIRGDGDVD 93 PP PPP P+ RR+ + + + S + S AS+ K GD ++D Sbjct: 453372 PPSPPPPPSPSPSSRRRVALSSQDKHLNKLLHSSRGRSSKASFTKKKTGDNELD 453533 Score = 28.1 bits (61), Expect = 6.1 Identities = 17/47 (36%), Positives = 21/47 (44%) Frame = +2 Query: 42 PPPPPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQQVASRSASYKIRG 88 PPPPPP L+ HH + VVS A+ S+S K G Sbjct: 1189541 PPPPPPLLQFH---------HHHHHHHPFAVVSSSSATSSSS*KTAG 1189654 >gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun sequence Length = 4166812 Score = 28.9 bits (63), Expect = 3.6 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +3 Query: 42 PPPPPPKLEGEPT 54 PPPPPP EG+PT Sbjct: 3156972 PPPPPPHNEGQPT 3157010 Score = 28.1 bits (61), Expect = 6.1 Identities = 13/40 (32%), Positives = 18/40 (45%) Frame = +1 Query: 34 PRDNSWTLPPPPPPKLEGEPTDRRQTRVDEHHRTNQSQVV 73 P+DN T PPPP + P + DE + S V+ Sbjct: 561400 PKDNDGTAAAPPPPNNDDPPVEPPPPNKDEPPPADPSVVI 561519 Score = 28.1 bits (61), Expect = 6.1 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Frame = +2 Query: 6 QRTSDGRAGDRKQGTKQVQSPFFFNKGQPRDNSW-----TLPPPPPPKLEGEPTDRRQTR 60 Q T D K T + Q K QP+D + T PPP PK + +PT Q + Sbjct: 3332606 QATKDQPKDQSKDQTTKNQQQQTPTKDQPKDQTTKNQPQTPPPPSQPKEQPKPTPTTQPQ 3332785 Query: 61 VDE 63 + Sbjct: 3332786 TPQ 3332794 >gi|328869574|gb|GL883020.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EJPB12P01AWP9W-5, whole genome shotgun sequence Length = 629417 Score = 28.5 bits (62), Expect = 4.7 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 5/49 (10%) Frame = +3 Query: 13 AGDRKQGTKQVQSPFFFNKGQPRDNSWT-----LPPPPPPKLEGEPTDR 56 AG + V P R+NS +PPP PPK +GE D+ Sbjct: 170829 AGGGSSSSSMVPPPPMVPNPPSRENSGNNLNEFIPPPSPPKSDGEDDDQ 170975 >gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-o-80e12.f1-5, whole genome shotgun sequence Length = 2750715 Score = 27.7 bits (60), Expect = 7.9 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Frame = -3 Query: 30 NKGQPRDNSWTLPPP-PPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQQVASRSASYKIRG 88 N+ + + +S TLPPP PPP + T + R E + T + + ++S + I Sbjct: 2681143 NQSRSKVHSTTLPPPSPPPSTTMDQTSDDKKRPSEDNGTPSGRPTKRALSSSDSPSTIAL 2680964 Query: 89 DG 90 G Sbjct: 2680963 SG 2680958 >gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-p-12c09.r1-3, whole genome shotgun sequence Length = 1770755 Score = 27.7 bits (60), Expect = 7.9 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 4/57 (7%) Frame = -1 Query: 17 KQGTKQVQSPFFFNKGQPRDNSWTLP----PPPPPKLEGEPTDRRQTRVDEHHRTNQ 69 K K + S F +P +P PPPPPK EP +T D+ Q Sbjct: 1732226 KVAPKPIVSKFVQEDYKPEPTPAPVPVKKAPPPPPKRSAEPEPEPETYDDQQSYDQQ 1732056 Database: D.fasciculatum/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,019,208 Number of sequences in database: 25 Lambda K H 0.318 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,393,764 Number of Sequences: 25 Number of extensions: 141831 Number of successful extensions: 3686 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 2473 Number of HSP's gapped (non-prelim): 2191 length of query: 250 length of database: 10,339,736 effective HSP length: 97 effective length of query: 153 effective length of database: 10,337,311 effective search space: 1581608583 effective search space used: 1581608583 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (27.3 bits)