TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= T.pseudonana 2 (250 letters) Database: D.discoideum_AX4/genome.fa 6 sequences; 33,943,072 total letters Searching......done Score E Sequences producing significant alignments: (bits) Value gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso... 32 0.35 gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso... 32 0.46 gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos... 32 0.60 gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromoso... 30 1.3 gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso... 30 2.3 gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso... 29 3.0 >gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5, whole genome shotgun sequence Length = 5125352 Score = 32.3 bits (72), Expect = 0.35 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 9/69 (13%) Frame = -1 Query: 30 NKGQPRDNSWTLPPPPPPKLEGEPT-------DRRQTRVDEHHRTNQSQ--VVSQQVASR 80 N G +S + PPPPPP PT + QT V + H N+S+ S Q++S Sbjct: 880796 NSGSSGYSSNSPPPPPPPPPPPPPTSSSSSSSNSPQTFVSQQHALNRSKDNTSSFQISSS 880617 Query: 81 SASYKIRGD 89 S S ++ D Sbjct: 880616 SFSSSLKKD 880590 Score = 29.3 bits (64), Expect = 3.0 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +2 Query: 40 TLPPPPPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQQ 76 TLPPPPPP L + + +Q+ + Q Q QQ Sbjct: 2552693 TLPPPPPPTLPPQHSLEQQSTKQQIFTQQQQQQQQQQ 2552803 Score = 28.5 bits (62), Expect = 5.1 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 3/74 (4%) Frame = +1 Query: 16 RKQGTKQVQSPFFFNKGQPRDNSWT---LPPPPPPKLEGEPTDRRQTRVDEHHRTNQSQV 72 ++Q +Q Q + Q + N T LPPPPPP + + ++Q + + + Q Q Sbjct: 2661637 QQQQQQQQQQQQQQQQQQQQQNPQTQQQLPPPPPPPPQQQQQQQQQQQQQQQQQQQQQQQ 2661816 Query: 73 VSQQVASRSASYKI 86 Q A K+ Sbjct: 2661817 QPQPTEEWDAPSKM 2661858 Score = 28.1 bits (61), Expect = 6.6 Identities = 13/61 (21%), Positives = 26/61 (42%) Frame = +1 Query: 2 FVDGQRTSDGRAGDRKQGTKQVQSPFFFNKGQPRDNSWTLPPPPPPKLEGEPTDRRQTRV 61 ++D D ++ + +++ +K D T PPPPPPK+ + + + Sbjct: 1277983 YIDNDNEDDNLKNEKDENIIKIKK--VHDKDYEIDEQLTPPPPPPPKIIEKKKEEEEEEE 1278156 Query: 62 D 62 D Sbjct: 1278157 D 1278159 >gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole genome shotgun sequence Length = 5450249 Score = 32.0 bits (71), Expect = 0.46 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +3 Query: 42 PPPPPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQQ 76 PPPPPP+ + E +++Q + E + Q Q QQ Sbjct: 4096881 PPPPPPQEQQEQQEQQQQQQQEQQQQQQQQQQQQQ 4096985 Score = 28.1 bits (61), Expect = 6.6 Identities = 11/39 (28%), Positives = 18/39 (46%) Frame = -1 Query: 33 QPRDNSWTLPPPPPPKLEGEPTDRRQTRVDEHHRTNQSQ 71 Q + LPPPPPP + + + + +H +Q Q Sbjct: 4389017 QQQKQELLLPPPPPPPPQEDEDEEQHQHQHQHQHQHQHQ 4388901 Score = 27.7 bits (60), Expect = 8.6 Identities = 19/69 (27%), Positives = 30/69 (43%) Frame = +2 Query: 8 TSDGRAGDRKQGTKQVQSPFFFNKGQPRDNSWTLPPPPPPKLEGEPTDRRQTRVDEHHRT 67 T+ A R GT S ++ QP LP PP P L + ++Q + + ++ Sbjct: 5106161 TTPSTASSRNSGTSSPTSSRN-SRNQP------LPAPPTPPLPSQQQQQQQQQQQQINQQ 5106319 Query: 68 NQSQVVSQQ 76 Q Q +QQ Sbjct: 5106320 QQQQQTNQQ 5106346 >gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole genome shotgun sequence Length = 8484197 Score = 31.6 bits (70), Expect = 0.60 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Frame = -1 Query: 17 KQGTKQVQSPFFFNKGQPRDNSWTLPPPPPPKL-EGEPTDRRQTRVDEHHRTNQSQVV-- 73 KQ K S F +N + PPPP + + P +Q+ +HH ++ ++ + Sbjct: 431147 KQQQKSTSSSFPKFPSNSHNNEYNQPPPPAYEFKQSPPQQHKQSPPQQHHNSHDNEALIK 430968 Query: 74 -SQQVASRS 81 QQVA ++ Sbjct: 430967 YQQQVAQQN 430941 Score = 28.9 bits (63), Expect = 3.9 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Frame = -3 Query: 5 GQRTSDGRAGDRKQGTKQVQSPFFF-NKGQPRDNSWTLPPPPPPKLEGEPTDRRQTRVDE 63 GQ+ G ++QG +Q + P +GQP+ S + PP L+ + ++Q + + Sbjct: 6581841 GQQQQRGPQQGQQQGQQQQRGPQQGPQQGQPKQPSGSWGKQPPQNLQPQQQPQQQQQQQQ 6581662 Query: 64 HHRTNQSQVVSQQVASRSAS 83 +T + + +S +A+ Sbjct: 6581661 QQQTTTTTTTTTSSSSPAAA 6581602 Score = 28.9 bits (63), Expect = 3.9 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = -2 Query: 26 PFFFNKGQPRDNSWTLPPPPPP 47 P + P DNS PPPPPP Sbjct: 5446546 PPLYKPTSPPDNSLVAPPPPPP 5446481 Score = 28.5 bits (62), Expect = 5.1 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = +3 Query: 16 RKQGTKQVQSPFFFNKGQPRDNSWTLPPPPPPKLEGEPTD 55 ++Q +Q Q+ F K QP PPPPPPK E D Sbjct: 2037741 QQQQQQQQQTTPVFEKPQP-------PPPPPPKKEPTQPD 2037839 Score = 28.5 bits (62), Expect = 5.1 Identities = 12/47 (25%), Positives = 22/47 (46%) Frame = -1 Query: 42 PPPPPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQQVASRSASYKIRG 88 PPPP + + + ++Q + + + Q Q QQ+ S+ Y G Sbjct: 5911274 PPPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQIPQDSSPYLYNG 5911134 Score = 28.5 bits (62), Expect = 5.1 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = -3 Query: 30 NKGQPRDNSWTLPPPPPPKLEGEPTDRRQ 58 N+ + +++ PPPPPP + EP ++ Q Sbjct: 1741566 NQSEQQNSEIEQPPPPPPPQQIEPDEKNQ 1741480 Score = 28.5 bits (62), Expect = 5.1 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 13/63 (20%) Frame = -1 Query: 25 SPFFFNKGQPRDNSWTLPPPPP----------PKLE---GEPTDRRQTRVDEHHRTNQSQ 71 SPF Q S + PPPPP P LE GEP + R +V E H N + Sbjct: 1583057 SPF-----QETPPSLSAPPPPPPPPPPSSQENPNLELPLGEPYEPRNDQVIEEHECNIKR 1582893 Query: 72 VVS 74 + S Sbjct: 1582892 ISS 1582884 Score = 28.1 bits (61), Expect = 6.6 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = +2 Query: 25 SPFFFNKGQPRDNSWTLPPPPPPKLEGEPTDRRQTRVDEH 64 S F F + P + T PPPP +L+ + + Q +H Sbjct: 25175 STFMFLQNFPNEKPPTYKPPPPTQLQSQHNNNNQLLQHQH 25294 Score = 28.1 bits (61), Expect = 6.6 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 4/86 (4%) Frame = -3 Query: 6 QRTSDGRAGDRKQGTKQVQSPFFFNKGQPRDNSWTLP----PPPPPKLEGEPTDRRQTRV 61 Q+ + ++Q +Q Q + Q + T P PPPP + EP + Sbjct: 5499036 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTKPKSPSPPPPQQQAEEPISQPTLND 5498857 Query: 62 DEHHRTNQSQVVSQQVASRSASYKIR 87 DE+ R Q + QQ R +I+ Sbjct: 5498856 DEYERQAQIALQQQQEKQRQMELEIQ 5498779 >gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole genome shotgun sequence Length = 3602379 Score = 30.4 bits (67), Expect = 1.3 Identities = 15/28 (53%), Positives = 16/28 (57%) Frame = -1 Query: 26 PFFFNKGQPRDNSWTLPPPPPPKLEGEP 53 PF F P N LPPPPPP L+ EP Sbjct: 2370648 PFDF----PEPNLEPLPPPPPPDLDFEP 2370577 Score = 29.3 bits (64), Expect = 3.0 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = -1 Query: 34 PRDNSWTLPPPPPP-KLEGEPTDRRQTRVDEHHRTNQSQVVSQQV 77 P++ + PPPPPP + + P + + HH Q Q+ QQ+ Sbjct: 3082791 PQNQNQQPPPPPPPNQHQHHPQHLQHAQNQAHHIIQQQQLHQQQL 3082657 Score = 29.3 bits (64), Expect = 3.0 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +3 Query: 25 SPFFFNKGQPRDNSWTLPPPPPPKLEGEPT 54 SP N G R+ S+ PPPPP L PT Sbjct: 990456 SPPISNSGGSRNGSFLDSPPPPPPLSIPPT 990545 Score = 28.1 bits (61), Expect = 6.6 Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 33/186 (17%) Frame = +3 Query: 4 DGQRTSDGRAGDRKQGTKQVQSPFFFNKGQPRDNSWTLP-PPPPPKLEGEPT-------D 55 D D + + G + + GQP + + P PPPPP L+ +P + Sbjct: 1467615 DKNSKEDNNSNNNNNGDSTIILSSDSSFGQPTPKATSTPTPPPPPPLKTQPVPISSGVEN 1467794 Query: 56 RRQTRVDEHHRT-NQSQVVSQQVASRSASYKIRGDGDVDRVTWVCRRSRPGSVGFTCPS- 113 + H + N + +V ++ +R IR +D GS FT S Sbjct: 1467795 NSSPNLWSHRNSPNFNGLVREKSRARIGRLTIRSASPLDLTYLPDPSKNEGSPQFTSQSL 1467974 Query: 114 ------SHVFVFSLVILDSSAAAIHSKM-----------------LSSASRILFLLATIL 150 + S+V SS + I+ + S +S +L L T+ Sbjct: 1467975 DFTPNIPPIITNSIVEQQSSLSGINKPIPQRTISSSENSPLSRANSSISSSLLILTPTLT 1468154 Query: 151 ALTTAT 156 +L+T+T Sbjct: 1468155 SLSTST 1468172 Score = 27.7 bits (60), Expect = 8.6 Identities = 14/52 (26%), Positives = 22/52 (42%) Frame = -1 Query: 40 TLPPPPPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQQVASRSASYKIRGDGD 91 T PPPPPP + T + QT + +++ S S I +G+ Sbjct: 629139 TTPPPPPPPITTTTTQKSQTHQQDDEDIKNIGRINKANGSSSNLKSILNEGN 628984 >gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence Length = 6357299 Score = 29.6 bits (65), Expect = 2.3 Identities = 15/51 (29%), Positives = 22/51 (43%) Frame = -3 Query: 21 KQVQSPFFFNKGQPRDNSWTLPPPPPPKLEGEPTDRRQTRVDEHHRTNQSQ 71 +Q P K +P ++ PPPPPP + + Q HH+ Q Q Sbjct: 4881318 QQQHQPPPIPKSRPISQHYSQPPPPPPPIHHHQQQQEQDYY--HHQQQQEQ 4881172 Score = 27.7 bits (60), Expect = 8.6 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = +2 Query: 27 FFFNKGQPRDNSWTLPPPPPP 47 F F P NS + PPPPPP Sbjct: 2380772 FLFTVSPPWFNSLSTPPPPPP 2380834 >gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole genome shotgun sequence Length = 4923596 Score = 29.3 bits (64), Expect = 3.0 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = -2 Query: 27 FFFNKGQPRDNSWTLPPPPPPKLEGEPTDRRQTRVDEHHRTNQSQVVS 74 FFF + P NS T PPPPPP Q+ ++ T +S S Sbjct: 1880284 FFFRENIP--NSSTSPPPPPPPSSNNNNPISQSVPEKTKTTVESSTTS 1880147 Score = 28.5 bits (62), Expect = 5.1 Identities = 11/35 (31%), Positives = 18/35 (51%) Frame = -3 Query: 42 PPPPPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQQ 76 PPPPPP + + ++Q + + + Q Q QQ Sbjct: 1337499 PPPPPPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 1337395 Score = 28.1 bits (61), Expect = 6.6 Identities = 11/35 (31%), Positives = 18/35 (51%) Frame = -3 Query: 42 PPPPPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQQ 76 PPPPPP + + ++Q + + + Q Q QQ Sbjct: 1337502 PPPPPPPPQQQQQQQQQQQQQQQQQQQQQQQQQQQ 1337398 Score = 28.1 bits (61), Expect = 6.6 Identities = 10/35 (28%), Positives = 19/35 (54%) Frame = -3 Query: 42 PPPPPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQQ 76 PPPPPP+ + + ++Q + + + Q Q Q+ Sbjct: 1337496 PPPPPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQE 1337392 Score = 27.7 bits (60), Expect = 8.6 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -1 Query: 36 DNSWTLPPPPPPKLEGEPTDRRQTRVD 62 +N T PPPPPP TDR + R++ Sbjct: 2910086 NNDTTTPPPPPPPPPIINTDRLEKRLE 2910006 Score = 27.7 bits (60), Expect = 8.6 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +1 Query: 36 DNSWTLPPPPPPKLEGEPTDRRQTRVDEHHRTNQSQVVS 74 ++S LPPPPP + R T E H + + +VS Sbjct: 3439990 NSSGGLPPPPPTASHVDNRSRSHTLAGESHSSENTPLVS 3440106 Database: D.discoideum_AX4/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 33,943,072 Number of sequences in database: 6 Lambda K H 0.318 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,506,006 Number of Sequences: 6 Number of extensions: 112720 Number of successful extensions: 2677 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 1197 Number of HSP's gapped (non-prelim): 2328 length of query: 250 length of database: 11,314,357 effective HSP length: 98 effective length of query: 152 effective length of database: 11,313,769 effective search space: 1719692888 effective search space used: 1719692888 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (27.7 bits)