TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= T.pseudonana 2 (250 letters) Database: A.laibachii_Nc14/genome.fa 3816 sequences; 32,740,139 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|325195160|emb|FR825955.1| Albugo laibachii Nc14, genomic cont... 29 0.38 gi|325194176|emb|FR825050.1| Albugo laibachii Nc14, genomic cont... 32 0.43 gi|325192874|emb|FR824532.1| Albugo laibachii Nc14, genomic cont... 31 0.95 gi|325180604|emb|FR824053.1| Albugo laibachii Nc14, genomic cont... 30 1.2 gi|325182692|emb|FR824076.1| Albugo laibachii Nc14, genomic cont... 30 1.6 gi|325192665|emb|FR824497.1| Albugo laibachii Nc14, genomic cont... 26 1.6 gi|325179702|emb|FR824047.1| Albugo laibachii Nc14, genomic cont... 29 2.8 gi|325193779|emb|FR824802.1| Albugo laibachii Nc14, genomic cont... 24 3.0 gi|325192225|emb|FR824445.1| Albugo laibachii Nc14, genomic cont... 29 3.6 gi|325196097|emb|FR826887.1| Albugo laibachii Nc14, genomic cont... 29 3.6 gi|325179861|emb|FR824048.1| Albugo laibachii Nc14, genomic cont... 25 3.7 gi|325182986|emb|FR824080.1| Albugo laibachii Nc14, genomic cont... 28 4.7 gi|325186932|emb|FR824169.1| Albugo laibachii Nc14, genomic cont... 28 4.7 gi|325184977|emb|FR824117.1| Albugo laibachii Nc14, genomic cont... 28 6.2 gi|325186178|emb|FR824146.1| Albugo laibachii Nc14, genomic cont... 28 8.1 gi|325184809|emb|FR824113.1| Albugo laibachii Nc14, genomic cont... 23 9.0 >gi|325195160|emb|FR825955.1| Albugo laibachii Nc14, genomic contig CONTIG_3021_NC14_v4_489_61 Length = 489 Score = 28.9 bits (63), Expect(2) = 0.38 Identities = 9/12 (75%), Positives = 11/12 (91%) Frame = -3 Query: 38 SWTLPPPPPPKL 49 SW +PPPPPP+L Sbjct: 265 SWFIPPPPPPRL 230 Score = 21.9 bits (45), Expect(2) = 0.38 Identities = 8/14 (57%), Positives = 8/14 (57%) Frame = -1 Query: 41 LPPPPPPKLEGEPT 54 L PPPPP PT Sbjct: 258 LSPPPPPHDSSRPT 217 >gi|325194176|emb|FR825050.1| Albugo laibachii Nc14, genomic contig CONTIG_1535_NC14_v4_2008_226 Length = 2008 Score = 32.0 bits (71), Expect = 0.43 Identities = 17/64 (26%), Positives = 28/64 (43%) Frame = -3 Query: 44 PPPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQQVASRSASYKIRGDGDVDRVTWVCRRSR 103 PPPP+L ++ + +D+H + V V + R DGDV + C +S Sbjct: 917 PPPPQLAYATLEQAKAAIDDHAQQEDYVV----VVKHTKKVDNRKDGDVKALILACSQSN 750 Query: 104 PGSV 107 P + Sbjct: 749 PSFI 738 >gi|325192874|emb|FR824532.1| Albugo laibachii Nc14, genomic contig CONTIG_493_NC14_v4_13782_241 Length = 13782 Score = 30.8 bits (68), Expect = 0.95 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Frame = +3 Query: 64 HHRTNQSQVVSQQVASRSASYKIRGDGDV-DRVTWVCRRSRPGSVGFTCPSSHVFVFSLV 122 HH + +QV + V +R ++ + D+ R W C G+ CPS H+F FS V Sbjct: 4599 HHGSR*TQVHGEDVPNRPTAHATKMVHDIYTRPRWACHW*LQGN----CPSHHIFSFSPV 4766 >gi|325180604|emb|FR824053.1| Albugo laibachii Nc14, genomic contig CONTIG_8_NC14_v4_238846_215 Length = 238846 Score = 30.4 bits (67), Expect = 1.2 Identities = 19/60 (31%), Positives = 29/60 (48%) Frame = -1 Query: 45 PPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQQVASRSASYKIRGDGDVDRVTWVCRRSRP 104 PPP+L + +T +D+H + + VV V R+ R DGDV + C +S P Sbjct: 400 PPPQLAYATLQQAKTAIDDHAQ-QEGYVV---VVKRTKKVGNRKDGDVKALILSCSQSNP 233 >gi|325182692|emb|FR824076.1| Albugo laibachii Nc14, genomic contig CONTIG_31_NC14_v4_147313_234 Length = 147313 Score = 30.0 bits (66), Expect = 1.6 Identities = 19/61 (31%), Positives = 27/61 (44%) Frame = +2 Query: 105 GSVGFTCPSSHVFVFSLVILDSSAAAIHSKMLSSASRILFLLATILALTTATLHGRIESC 164 G V C S +F F + L ++ + + LS LFL + I T TLH SC Sbjct: 32192 GHVFVYCHSMTLFAFKFLNLTNNDSNTLIRFLSITLSFLFLQSDIF*FTACTLHLHYRSC 32371 Query: 165 S 165 + Sbjct: 32372 T 32374 >gi|325192665|emb|FR824497.1| Albugo laibachii Nc14, genomic contig CONTIG_454_NC14_v4_16432_283 Length = 16432 Score = 25.8 bits (55), Expect(2) = 1.6 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = -3 Query: 3 VDGQRTSDGRAGDRKQGTKQVQSPFFFNKGQPRDNSWTLPPPPPP 47 +DG+ DG G GT PF + + LPPPPPP Sbjct: 8480 IDGEVGIDGEVGIDGAGTCG*GVPFLGVL-----DGYQLPPPPPP 8361 Score = 22.3 bits (46), Expect(2) = 1.6 Identities = 8/13 (61%), Positives = 8/13 (61%) Frame = -3 Query: 42 PPPPPPKLEGEPT 54 PPPPPP PT Sbjct: 8279 PPPPPPPPPPPPT 8241 >gi|325179702|emb|FR824047.1| Albugo laibachii Nc14, genomic contig CONTIG_2_NC14_v4_395950_240 Length = 395950 Score = 29.3 bits (64), Expect = 2.8 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = +1 Query: 35 RDNSWTLPPPPPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQQVASRSASYKIR 87 R +S T PP P ++ P +R Q+ HRT S + + S +A+ +R Sbjct: 231193 RASSRTNNPPEPDRMPSCPVNRNQSYTFRQHRTANSNKKTIEPRSTNAAKTVR 231351 >gi|325193779|emb|FR824802.1| Albugo laibachii Nc14, genomic contig CONTIG_946_NC14_v4_4526_134 Length = 4526 Score = 23.9 bits (50), Expect(2) = 3.0 Identities = 7/15 (46%), Positives = 10/15 (66%) Frame = -1 Query: 42 PPPPPPKLEGEPTDR 56 PPPPPP+ + + R Sbjct: 3647 PPPPPPRADSSSSSR 3603 Score = 23.5 bits (49), Expect(2) = 3.0 Identities = 11/35 (31%), Positives = 16/35 (45%) Frame = -2 Query: 16 RKQGTKQVQSPFFFNKGQPRDNSWTLPPPPPPKLE 50 R+Q Q+ F + + + PPPPP LE Sbjct: 3730 RRQVASNSQASFSSSLASSAELCGSASPPPPPPLE 3626 >gi|325192225|emb|FR824445.1| Albugo laibachii Nc14, genomic contig CONTIG_402_NC14_v4_21140_258 Length = 21140 Score = 28.9 bits (63), Expect = 3.6 Identities = 17/60 (28%), Positives = 28/60 (46%) Frame = -2 Query: 45 PPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQQVASRSASYKIRGDGDVDRVTWVCRRSRP 104 PPP+L ++ + +D+H + + V V R+ R DGDV + C +S P Sbjct: 19054 PPPQLARATLEQAKAVIDDHAQQEGNFV----VVKRTKIVGNRKDGDVKDLILACSQSNP 18887 >gi|325196097|emb|FR826887.1| Albugo laibachii Nc14, genomic contig CONTIG_4054_NC14_v4_278_277 Length = 278 Score = 28.9 bits (63), Expect = 3.6 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Frame = +2 Query: 35 RDNSWTLP------PPPPPKLEGEPTDRRQTRVDEHHRTNQSQVVSQQVASRSASYKIRG 88 RD++WT P PPP+L ++ + +D+H + V V R+ R Sbjct: 65 RDSNWTKRRNHNEMPAPPPQLAYATLEQAKAAIDDHAQQKGYVV----VVKRTKKLGNRK 232 Query: 89 DGDV 92 DGDV Sbjct: 233 DGDV 244 >gi|325179861|emb|FR824048.1| Albugo laibachii Nc14, genomic contig CONTIG_3_NC14_v4_366484_228 Length = 366484 Score = 24.6 bits (52), Expect(2) = 3.7 Identities = 8/12 (66%), Positives = 8/12 (66%) Frame = -2 Query: 42 PPPPPPKLEGEP 53 PPPPPP G P Sbjct: 172323 PPPPPPNCSGGP 172288 Score = 21.6 bits (44), Expect(2) = 3.7 Identities = 7/8 (87%), Positives = 7/8 (87%) Frame = -2 Query: 40 TLPPPPPP 47 T PPPPPP Sbjct: 172386 TPPPPPPP 172363 >gi|325182986|emb|FR824080.1| Albugo laibachii Nc14, genomic contig CONTIG_35_NC14_v4_137162_207 Length = 137162 Score = 28.5 bits (62), Expect = 4.7 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Frame = -2 Query: 102 SRPGSVGFTCPSSHVFVFSL--VILDSSAAAIHSKMLSSASRILFLLATILALTTATLHG 159 S PG+V +T P +H FSL ++ S+ + + LS SR FLL + + T L Sbjct: 28771 SDPGTVLYTSPPTHSIYFSLGPLV*RSNTSHVKHV*LSI*SRFPFLLPPLYSRDTGILI- 28595 Query: 160 RIESC 164 R+ C Sbjct: 28594 RVREC 28580 >gi|325186932|emb|FR824169.1| Albugo laibachii Nc14, genomic contig CONTIG_124_NC14_v4_71037_225 Length = 71037 Score = 28.5 bits (62), Expect = 4.7 Identities = 19/60 (31%), Positives = 27/60 (45%) Frame = -2 Query: 106 SVGFTCPSSHVFVFSLVILDSSAAAIHSKMLSSASRILFLLATILALTTATLHGRIESCS 165 S+ T P + F SL + +I +S A RIL L T++AL + SCS Sbjct: 40352 SLWTTYPKKYAFFVSL*SSTPTCGSISF*RMSCAYRILSALPTLIALPLRPMKSNATSCS 40173 >gi|325184977|emb|FR824117.1| Albugo laibachii Nc14, genomic contig CONTIG_72_NC14_v4_96858_243 Length = 96858 Score = 28.1 bits (61), Expect = 6.2 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 2/48 (4%) Frame = +2 Query: 197 GKQAVLTIYEGEGEEVEGWVEKE--KIVLSELETKVTVVWVLTECRFM 242 G++ L I G+ EG +++E + L E +T+++V + +T CRF+ Sbjct: 80207 GQERSLAINLGDLVNFEGKLQREARRDDLEE*DTRISVAFCVTNCRFL 80350 >gi|325186178|emb|FR824146.1| Albugo laibachii Nc14, genomic contig CONTIG_101_NC14_v4_78707_237 Length = 78707 Score = 27.7 bits (60), Expect = 8.1 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%) Frame = +3 Query: 205 YEGEGEEVEGWVEKEKIVLSELET-----KVTVVWVLTECRFMCCNSA 247 YE +G E EG E E+ + E E K + +W L CRFM S+ Sbjct: 39153 YEEDGGEDEGEEEDEEDMDEEFEVFDELKKSSWLWYLRLCRFMRSKSS 39296 >gi|325184809|emb|FR824113.1| Albugo laibachii Nc14, genomic contig CONTIG_68_NC14_v4_98267_226 Length = 98267 Score = 23.1 bits (48), Expect(2) = 9.0 Identities = 7/12 (58%), Positives = 9/12 (75%) Frame = +1 Query: 41 LPPPPPPKLEGE 52 +PPPPPP + E Sbjct: 75025 IPPPPPPPADDE 75060 Score = 21.9 bits (45), Expect(2) = 9.0 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = +1 Query: 35 RDNSWTLPPPPPP 47 R +S+ PPPPPP Sbjct: 75010 RLSSFIPPPPPPP 75048 Database: A.laibachii_Nc14/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 32,740,139 Number of sequences in database: 3816 Lambda K H 0.318 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,232,163 Number of Sequences: 3816 Number of extensions: 152186 Number of successful extensions: 1315 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 379 Number of HSP's successfully gapped in prelim test: 43 Number of HSP's that attempted gapping in prelim test: 634 Number of HSP's gapped (non-prelim): 834 length of query: 250 length of database: 10,913,379 effective HSP length: 98 effective length of query: 152 effective length of database: 10,539,411 effective search space: 1601990472 effective search space used: 1601990472 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (27.3 bits)