TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Takifugu rubripes (120 letters) Database: D.discoideum_AX4/genome.fa 6 sequences; 33,943,072 total letters Searching......done Score E Sequences producing significant alignments: (bits) Value gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso... 30 0.38 gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso... 28 1.1 gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos... 28 1.1 gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromoso... 28 1.4 gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso... 27 3.2 gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso... 27 4.2 >gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole genome shotgun sequence Length = 5450249 Score = 30.0 bits (66), Expect = 0.38 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = -1 Query: 72 EDEVPEEFRFSPAKDSPFKDEEAYKPATSSPVTENASSDPKTEEKH 117 ED+ +EF DS DEE YKP SSP+T N +++ H Sbjct: 5356505 EDDEDDEF------DST--DEETYKPPQSSPITINNNNNNNNNHYH 5356392 >gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5, whole genome shotgun sequence Length = 5125352 Score = 28.5 bits (62), Expect = 1.1 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -3 Query: 32 ELVLLNHYYEELDRIALSDMTRSEINALLG 61 +L+++NHY+ + I LSD S + LLG Sbjct: 3380436 DLLMMNHYHHLMTMIHLSDYQMSNLRYLLG 3380347 Score = 26.2 bits (56), Expect = 5.5 Identities = 11/45 (24%), Positives = 18/45 (40%) Frame = -2 Query: 70 QPEDEVPEEFRFSPAKDSPFKDEEAYKPATSSPVTENASSDPKTE 114 +P ++ P + P +D P KDE P + + D E Sbjct: 1265851 EPTEDEPTKDSCEPTEDEPTKDEPTEDSCECEPTEDRLTEDEPAE 1265717 >gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole genome shotgun sequence Length = 8484197 Score = 28.5 bits (62), Expect = 1.1 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Frame = -2 Query: 11 VTQDIPLYHNLVMKHIPGADPELVLLNHYYEELDRIALSDMTRSEIN--ALLGEL 63 + ++I L H ++++ + + Y+E L ++ L+D+ RSEIN LLG+L Sbjct: 7377877 INKEIELSHEVLLQSL-----DSTCEIEYHERLFKLCLNDLKRSEINIARLLGKL 7377728 Score = 26.6 bits (57), Expect = 4.2 Identities = 12/46 (26%), Positives = 23/46 (50%) Frame = +1 Query: 70 QPEDEVPEEFRFSPAKDSPFKDEEAYKPATSSPVTENASSDPKTEE 115 Q + + ++F + +PF+DE Y + P+ AS P +E+ Sbjct: 5523025 QQQQQQQQQFDSNGKPFNPFRDENKYFNSKPQPIESKASFPPFSEK 5523162 >gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole genome shotgun sequence Length = 3602379 Score = 28.1 bits (61), Expect = 1.4 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -3 Query: 17 LYHNLVMKHIPGADPELVLLNHYY 40 L+H+L+ HI D + + LN+YY Sbjct: 1074112 LFHSLISNHIKSVDLDYLHLNYYY 1074041 >gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence Length = 6357299 Score = 26.9 bits (58), Expect = 3.2 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = -1 Query: 7 VKAFVTQDIPLYHNLVMKHIPGADPELVLLNH-YYEELDRIALSDMTRSEINALLGE 62 V F+ D P NL+++ P P+LVLL+H Y+++D D + LG+ Sbjct: 4694366 VHGFLHSD-PHPGNLLVRKTPNGKPDLVLLDHGLYKKIDENVRLDFCHLWKSLCLGD 4694199 Score = 26.6 bits (57), Expect = 4.2 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%) Frame = -1 Query: 2 NINRNVKAFVTQDI----PLYHNLVMKHIPGADPELVLLNHYY 40 N N N K +I P+++NL+ K DP+ + N YY Sbjct: 1105673 NNNNNNKNLTISEIIGKNPIWNNLIFKSEKEDDPKSFMFNGYY 1105545 Score = 26.2 bits (56), Expect = 5.5 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Frame = +3 Query: 41 EELDRIALS---DMTRSEINALLGELGFYKRAQPEDEVPEEFRFSPAKDSPFKDEE 93 E++DR + D + S A LGEL Y Q E EE+ D P D+E Sbjct: 393954 EDIDRFSSEVKKDDSSSNSTASLGELDDY---QDEQSYQEEYSNDEDTDPPIPDDE 394112 Score = 25.4 bits (54), Expect = 9.3 Identities = 14/55 (25%), Positives = 20/55 (36%) Frame = -1 Query: 65 FYKRAQPEDEVPEEFRFSPAKDSPFKDEEAYKPATSSPVTENASSDPKTEEKHID 119 F + P S + SPF P TSSP ++SS ++ D Sbjct: 5715848 FLTLSPPSSSSSSSISSSSSSSSPFFSSAPLLPPTSSPPPSSSSSSSSSDNSSSD 5715684 >gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole genome shotgun sequence Length = 4923596 Score = 26.6 bits (57), Expect = 4.2 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = +2 Query: 31 PELVLLNHYYEELDRIALSDMTRSEINALLGELGFYK 67 P L+ + +YY LD++ + + + +N L +L FYK Sbjct: 1615997 PLLLTIINYYYLLDQLNIHEYNEAYLNQPLMKLNFYK 1616107 Database: D.discoideum_AX4/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 33,943,072 Number of sequences in database: 6 Lambda K H 0.312 0.132 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,935,608 Number of Sequences: 6 Number of extensions: 55796 Number of successful extensions: 184 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 137 Number of HSP's gapped (non-prelim): 131 length of query: 120 length of database: 11,314,357 effective HSP length: 87 effective length of query: 33 effective length of database: 11,313,835 effective search space: 373356555 effective search space used: 373356555 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 54 (25.4 bits)