TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Takifugu rubripes (120 letters) Database: C.fasciculata/genome.fa 1089 sequences; 37,048,325 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value Cf_Contig980 | | 1 to 109705 27 2.6 Cf_Contig855 | | 1 to 84550 27 2.6 Cf_Contig873 | | 1 to 40612 27 3.4 Cf_Contig1065 | | 1 to 188513 27 4.4 Cf_Contig970 | | 1 to 287441 27 4.4 Cf_Contig927 | | 1 to 107493 26 5.7 Cf_Contig894 | | 1 to 240449 26 5.7 Cf_Contig771 | | 1 to 94184 26 5.7 Cf_Contig1019 | | 1 to 118905 26 7.5 Cf_Contig914 | | 1 to 76929 26 7.5 Cf_Contig1050 | | 1 to 279392 25 9.8 Cf_Contig1020 | | 1 to 153148 25 9.8 Cf_Contig849 | | 1 to 88023 25 9.8 >Cf_Contig980 | | 1 to 109705 Length = 109705 Score = 27.3 bits (59), Expect = 2.6 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = -1 Query: 6 NVKAFVTQDIPLYHNLVMKHIPGAD-PELVLLNHYYEEL 43 NV FV +DIPL+ ++ PG PE YEEL Sbjct: 64732 NVPKFVAEDIPLFQGIMQDLFPGVSFPE-----REYEEL 64631 >Cf_Contig855 | | 1 to 84550 Length = 84550 Score = 27.3 bits (59), Expect = 2.6 Identities = 19/70 (27%), Positives = 30/70 (42%) Frame = +1 Query: 6 NVKAFVTQDIPLYHNLVMKHIPGADPELVLLNHYYEELDRIALSDMTRSEINALLGELGF 65 N F+ QD PL+ L+ PG DP R+ ++ ++ N +L E GF Sbjct: 67273 NAPKFIAQDEPLFKGLMGDLFPGLDP------------TRVPQENLAKASTN-VLKERGF 67413 Query: 66 YKRAQPEDEV 75 + D+V Sbjct: 67414 QINTKQIDKV 67443 >Cf_Contig873 | | 1 to 40612 Length = 40612 Score = 26.9 bits (58), Expect = 3.4 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = -3 Query: 73 DEVPEEFRFSPAKDSPFKDEEAYKPATSSPVTENASS 109 + +PE + P F E A+ P +SSP + SS Sbjct: 14036 EPLPEHYHTIPCAPVAFSSEIAHAPTSSSPAVASRSS 13926 >Cf_Contig1065 | | 1 to 188513 Length = 188513 Score = 26.6 bits (57), Expect = 4.4 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 8/60 (13%) Frame = +1 Query: 53 RSEINALLGELG-------FYKRAQPED-EVPEEFRFSPAKDSPFKDEEAYKPATSSPVT 104 R ++ LG+LG Y P+D EV + P + +PF D EAY A S+ T Sbjct: 98095 RGDVQYTLGQLGNRSNLHFVYAETVPDDGEVMVQL--VPVEGTPFSDLEAYFSALSAEAT 98268 >Cf_Contig970 | | 1 to 287441 Length = 287441 Score = 26.6 bits (57), Expect = 4.4 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -1 Query: 89 FKDEEAYKPATSSPVTENASSDPKTEEKHIDL 120 +KD + K AT S E+ SS P HID+ Sbjct: 75419 YKDAKVVKEATQSCAYEHFSSPPVKATSHIDV 75324 >Cf_Contig927 | | 1 to 107493 Length = 107493 Score = 26.2 bits (56), Expect = 5.7 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 12/58 (20%) Frame = -3 Query: 66 YKRAQPEDEVPEEFR-------FSPAKDSPFKD--EEAYK---PATSSPVTENASSDP 111 YKR QPED+ ++ + ++ + +KD E+AYK P + E A DP Sbjct: 67087 YKRDQPEDDAADDEKAPVDPDMYNTTNKNAYKDYGEDAYKRDQPEDDAADDEKAPVDP 66914 Score = 25.8 bits (55), Expect = 7.5 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 19/94 (20%) Frame = -2 Query: 37 NHYYEELD--RIALSDM-----TRSEINALLGELGFYKRAQPEDEVPEEFR-------FS 82 N Y E++D R ALS M T GE YKR QPED+ ++ + ++ Sbjct: 64115 NSYGEDMDEDRDALSRMDMYNTTNKNAYKDYGE-DAYKRDQPEDDAADDEKAPVDPDMYN 63939 Query: 83 PAKDSPFKD--EEAYK---PATSSPVTENASSDP 111 + +K+ E+AYK P + E A DP Sbjct: 63938 TTNKNAYKNYGEDAYKRDQPEDDAADDEKAPVDP 63837 >Cf_Contig894 | | 1 to 240449 Length = 240449 Score = 26.2 bits (56), Expect = 5.7 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +1 Query: 80 RFSPAKDSPFKDEEAYKPATSSPVTENASSDPK 112 RF+PA + + D P + SP A S+P+ Sbjct: 37744 RFAPAAPAAYADARGRPPGSLSPAPRVAPSEPR 37842 >Cf_Contig771 | | 1 to 94184 Length = 94184 Score = 26.2 bits (56), Expect = 5.7 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +2 Query: 67 KRAQPEDEVPEEFRFSPAKDSPFKDEEAYKPATSSPVTENASSDPKTE 114 K+ + E E + AKDS KD+ A KP + E A+ K E Sbjct: 78122 KKEEAEKAKDGEKNGAKAKDSAKKDDAAAKPKEAEKKEEAAAKSEKKE 78265 >Cf_Contig1019 | | 1 to 118905 Length = 118905 Score = 25.8 bits (55), Expect = 7.5 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +2 Query: 70 QPEDEVPEEFRFSPAKDSPFKDEEAYKPATSSPVTENASSDPKTEEK 116 + + V E+F FSP F E A P S+ N+ P+ E+K Sbjct: 41870 EERETVREDFSFSPIGRVAFGTERANSP--SAAACNNSRRTPRKEKK 42004 >Cf_Contig914 | | 1 to 76929 Length = 76929 Score = 25.8 bits (55), Expect = 7.5 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = -3 Query: 22 VMKHIPGADPELVLLNHYYEELDRIALSDMTRSEINALL 60 V+ H+ GAD V+L H Y L + L + +N ++ Sbjct: 2308 VLDHLVGADTVCVVLKHLYHPLGTLDLLALGLLHLNIIV 2192 >Cf_Contig1050 | | 1 to 279392 Length = 279392 Score = 25.4 bits (54), Expect = 9.8 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = -2 Query: 22 VMKHIPGADPELVLLNHYYEELDRIALSDMTRSEINALL 60 V+ H+ GAD V+L H Y L + L + +N ++ Sbjct: 260668 VLDHLVGADTVCVVLEHLYHPLRTLDLLALGLLHLNIIV 260552 >Cf_Contig1020 | | 1 to 153148 Length = 153148 Score = 25.4 bits (54), Expect = 9.8 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = +3 Query: 69 AQPEDEVPEEFRFSPAKDSPFKDEEAYKPATSSPVTENASS 109 A P +P ++ F+P+ SP A P+T P ++ SS Sbjct: 148362 APPRSALPAQWTFTPSASSPTSCSAAASPST-PPRAQHCSS 148481 >Cf_Contig849 | | 1 to 88023 Length = 88023 Score = 25.4 bits (54), Expect = 9.8 Identities = 10/30 (33%), Positives = 14/30 (46%) Frame = +3 Query: 88 PFKDEEAYKPATSSPVTENASSDPKTEEKH 117 P E +Y P +P +AS DP + H Sbjct: 50541 PLSVERSYTPFVEAPSALHASDDPAADASH 50630 Database: C.fasciculata/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 37,048,325 Number of sequences in database: 1089 Lambda K H 0.312 0.132 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,681,836 Number of Sequences: 1089 Number of extensions: 39532 Number of successful extensions: 221 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 126 Number of HSP's gapped (non-prelim): 123 length of query: 120 length of database: 12,349,441 effective HSP length: 88 effective length of query: 32 effective length of database: 12,253,609 effective search space: 392115488 effective search space used: 392115488 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 54 (25.4 bits)