TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Takifugu rubripes
         (120 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330849788|gb|ADNL01000815.1| Astrammina rara contig00937, who...    23   1.9  
gi|330849990|gb|ADNL01000613.1| Astrammina rara contig00686, who...    23   1.9  
gi|330847564|gb|ADNL01003039.1| Astrammina rara contig01152, who...    23   2.5  
gi|330847872|gb|ADNL01002731.1| Astrammina rara contig03220, who...    22   3.3  
gi|330849521|gb|ADNL01001082.1| Astrammina rara contig01268, who...    22   5.6  
gi|330850545|gb|ADNL01000058.1| Astrammina rara contig00061, who...    22   5.6  
gi|330848940|gb|ADNL01001663.1| Astrammina rara contig01974, who...    21   7.3  
gi|330849874|gb|ADNL01000729.1| Astrammina rara contig00833, who...    21   9.5  

>gi|330849788|gb|ADNL01000815.1| Astrammina rara contig00937, whole
           genome shotgun sequence
          Length = 1059

 Score = 23.1 bits (48), Expect = 1.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 77  EEFRFSPAKDSPFKDEE 93
           +E R++   DSPFK+E+
Sbjct: 331 KEIRYATNHDSPFKEEQ 281


>gi|330849990|gb|ADNL01000613.1| Astrammina rara contig00686, whole
           genome shotgun sequence
          Length = 508

 Score = 23.1 bits (48), Expect = 1.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 90  KDEEAYKPATSSPVTENASSDPKTEEKH 117
           +D E Y+ A +    +  S DP  +E+H
Sbjct: 313 QDVERYEEARNHDECQQCSKDPHAKEQH 396


>gi|330847564|gb|ADNL01003039.1| Astrammina rara contig01152, whole
            genome shotgun sequence
          Length = 1140

 Score = 22.7 bits (47), Expect = 2.5
 Identities = 7/42 (16%), Positives = 22/42 (52%)
 Frame = -2

Query: 3    INRNVKAFVTQDIPLYHNLVMKHIPGADPELVLLNHYYEELD 44
            +NR V+      + ++H+ +++ +  +    +L+  Y  +L+
Sbjct: 1040 VNRPVRVVARSSVVIFHSSLLEAVSLSSAVAILMREYVGQLE 915


>gi|330847872|gb|ADNL01002731.1| Astrammina rara contig03220, whole
           genome shotgun sequence
          Length = 1679

 Score = 22.3 bits (46), Expect = 3.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 16  PLYHNLVMKHIP 27
           P+YHNL + H P
Sbjct: 515 PVYHNLTVDHSP 550


>gi|330849521|gb|ADNL01001082.1| Astrammina rara contig01268,
          whole genome shotgun sequence
          Length = 881

 Score = 21.6 bits (44), Expect = 5.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 19 HNLVMKHIPGADPELVLLNHYY 40
          H+L   ++P A P  V L+H Y
Sbjct: 57 HSLGNTNLPSAPP*TVCLHHIY 122


>gi|330850545|gb|ADNL01000058.1| Astrammina rara contig00061, whole
            genome shotgun sequence
          Length = 9271

 Score = 21.6 bits (44), Expect = 5.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 28   GADPELVLLNHYY 40
            G  P LVL+NH Y
Sbjct: 8034 GGQPPLVLVNHSY 7996


>gi|330848940|gb|ADNL01001663.1| Astrammina rara contig01974,
          whole genome shotgun sequence
          Length = 170

 Score = 21.2 bits (43), Expect = 7.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 7  VKAFVTQDIPLYHNLVMKHIP 27
          + A  T+ + L+H LV +H+P
Sbjct: 50 ILALGTRCLLLFHALVTQHVP 112


>gi|330849874|gb|ADNL01000729.1| Astrammina rara contig00833, whole
           genome shotgun sequence
          Length = 718

 Score = 20.8 bits (42), Expect = 9.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 17  LYHNLVMKHIPGADPEL 33
           L+H +  + +PGA P L
Sbjct: 706 LFHKVSKRFLPGAPPPL 656


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.312    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,428
Number of Sequences: 3231
Number of extensions: 1519
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 120
length of database: 483,365
effective HSP length: 64
effective length of query: 56
effective length of database: 276,581
effective search space: 15488536
effective search space used: 15488536
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 42 (20.8 bits)