TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rattus novergicus
         (145 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T.congo.pschr.11                                                       28   2.1  
T.congo.pschr4                                                         27   3.6  
T.congo.pschr2                                                         26   8.1  

>T.congo.pschr.11
          Length = 4797796

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 1       MNILLSPPPLLLLLAALVAPATSITTYRPDWNRLRGLARGRVETC 45
               +N L  PPP+LL L  +  P +S  ++    +  RG     + TC
Sbjct: 3097779 LNTLYYPPPILLALTHIGIPTSSPPSFHGVVHLTRGQQEWPIPTC 3097645



 Score = 26.6 bits (57), Expect = 4.7
 Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
 Frame = +2

Query: 8       PPLLLLLAALVAPATSITTY----RPDWNRLRGL 37
               PP LL   A  APA S T Y      DW RL  L
Sbjct: 3668711 PPTLLQAQATPAPANSTTIYCSPPPQDWRRLHPL 3668812



 Score = 26.2 bits (56), Expect = 6.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 9      PLLLLLAALVAPATSITTYRPDWNRLRGLA 38
              PLL+ + ++  P TS+  +R  WN +R  A
Sbjct: 308603 PLLVYV*SVGHPTTSLLLFRGRWNNIRAYA 308692


>T.congo.pschr4
          Length = 1343510

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 24/76 (31%), Positives = 31/76 (40%)
 Frame = -1

Query: 67     YHNLVMKHLPGADPELVLLSRNYQELERIPLSQMTRDEINALVQELGFYRKSAPEAKVPP 126
              Y + V + L G   E  ++    Q L R+         +  LV+E GF         VPP
Sbjct: 342818 YADEVTRELCGTSDETTVVMFGEQLLPRLGHC------LAVLVEECGFSILDMQMVWVPP 342657

Query: 127    EYLWAPAKPPEDASDR 142
              E   A A PPE  S R
Sbjct: 342656 ETAAAYAVPPELGSGR 342609


>T.congo.pschr2
          Length = 799489

 Score = 25.8 bits (55), Expect = 8.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 1     MNILLSPPPLLLLLAALVAPATSITTYRPDW 31
             M +LLS PPL L  A L +    IT++   W
Sbjct: 11661 MMLLLSSPPLFLAAALLRSAFRMITSHSARW 11569


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.318    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,372,562
Number of Sequences: 11
Number of extensions: 61071
Number of successful extensions: 332
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 95
length of query: 145
length of database: 7,429,315
effective HSP length: 88
effective length of query: 57
effective length of database: 7,428,347
effective search space: 423415779
effective search space used: 423415779
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)