TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rattus novergicus
         (145 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338242608|gb|AFNH01001861.1| Gregarina niphandrodes asmbl.264...    30   0.29 
gi|338241207|gb|AFNH01002563.1| Gregarina niphandrodes asmbl.329...    29   0.65 
gi|338242558|gb|AFNH01001886.1| Gregarina niphandrodes asmbl.267...    28   1.4  
gi|338242984|gb|AFNH01001673.1| Gregarina niphandrodes asmbl.247...    27   1.9  
gi|338241273|gb|AFNH01002530.1| Gregarina niphandrodes asmbl.326...    27   3.2  
gi|338242229|gb|AFNH01002050.1| Gregarina niphandrodes asmbl.282...    26   4.2  
gi|338244957|gb|AFNH01000686.1| Gregarina niphandrodes asmbl.159...    26   4.2  
gi|338241005|gb|AFNH01002664.1| Gregarina niphandrodes asmbl.338...    26   5.5  
gi|338241155|gb|AFNH01002589.1| Gregarina niphandrodes asmbl.331...    26   5.5  
gi|338240686|gb|AFNH01002823.1| Gregarina niphandrodes asmbl.353...    25   7.2  
gi|338240793|gb|AFNH01002769.1| Gregarina niphandrodes asmbl.348...    25   7.2  
gi|338241195|gb|AFNH01002569.1| Gregarina niphandrodes asmbl.329...    25   7.2  
gi|338242858|gb|AFNH01001736.1| Gregarina niphandrodes asmbl.253...    25   7.2  
gi|338241498|gb|AFNH01002416.1| Gregarina niphandrodes asmbl.315...    25   9.4  
gi|338241500|gb|AFNH01002415.1| Gregarina niphandrodes asmbl.315...    25   9.4  
gi|338243612|gb|AFNH01001359.1| Gregarina niphandrodes asmbl.218...    25   9.4  
gi|338245805|gb|AFNH01000263.1| Gregarina niphandrodes asmbl.123...    25   9.4  

>gi|338242608|gb|AFNH01001861.1| Gregarina niphandrodes asmbl.2648,
             whole genome shotgun sequence
          Length = 34698

 Score = 30.0 bits (66), Expect = 0.29
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 117   KSAPEAKVPPEYLWAPAKPPEDASDRADL 145
             K A  A  PP     P KPPE+A++RA L
Sbjct: 21247 KEAAAASSPPAPKTEPEKPPEEAAERASL 21161


>gi|338241207|gb|AFNH01002563.1| Gregarina niphandrodes asmbl.3293,
             whole genome shotgun sequence
          Length = 27363

 Score = 28.9 bits (63), Expect = 0.65
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 8     PPLLLLLAALVAPATSITTYRPDWNRLRGLARGR 41
             PP  LLLA    P++     RPD  RLR  AR R
Sbjct: 10748 PPRPLLLAGRTPPSSDRGAGRPDLARLRARARAR 10849


>gi|338242558|gb|AFNH01001886.1| Gregarina niphandrodes asmbl.2671,
            whole genome shotgun sequence
          Length = 13334

 Score = 27.7 bits (60), Expect = 1.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 15   AALVAPATSITTYRPDWNRLRGLARGRVETCGGXQLNRLKEVKAFVT 61
            +A+ APATS TTY+P W +   +      T     L +   V+A  T
Sbjct: 1489 SAVQAPATSTTTYQP-WGQTSAVQAPETSTTAHQPLTQTSAVQAPTT 1352


>gi|338242984|gb|AFNH01001673.1| Gregarina niphandrodes asmbl.2476,
            whole genome shotgun sequence
          Length = 14030

 Score = 27.3 bits (59), Expect = 1.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 5    LSPPPLLLLLAALVAPATSITTYRPDWN 32
            LSPP +       V+P +  TTY P WN
Sbjct: 4864 LSPPSITTQYHHSVSPPSITTTYPPPWN 4947


>gi|338241273|gb|AFNH01002530.1| Gregarina niphandrodes asmbl.3262,
            whole genome shotgun sequence
          Length = 6795

 Score = 26.6 bits (57), Expect = 3.2
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = -2

Query: 4    LLSPPPLLLLLAALVAPATSITTYRPDWNRLRGLARGR 41
            L  P P L  L   V P  S    RPDW+R    A GR
Sbjct: 5327 LRQPLPELAPLR*PVPPCGSEPPRRPDWDRSTATAEGR 5214


>gi|338242229|gb|AFNH01002050.1| Gregarina niphandrodes asmbl.2821,
            whole genome shotgun sequence
          Length = 11265

 Score = 26.2 bits (56), Expect = 4.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 99   QMTRDEINALVQELGFYRKSAPEAKVPPEYLWAPAKPPE 137
            Q+T   I     + G+Y +S  EA V  E++    KPP+
Sbjct: 8907 QVTDQFIERFKHDAGYYARSKEEATVTAEHIVR*WKPPD 9023


>gi|338244957|gb|AFNH01000686.1| Gregarina niphandrodes asmbl.15995,
            whole genome shotgun sequence
          Length = 17998

 Score = 26.2 bits (56), Expect = 4.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 117  KSAPEAKVPPEYLWAPAKPPEDASDR 142
            + AP+A  PP Y  +P  PPE AS R
Sbjct: 2606 RPAPKAS-PPSYPKSPGPPPERASGR 2680


>gi|338241005|gb|AFNH01002664.1| Gregarina niphandrodes asmbl.3389,
             whole genome shotgun sequence
          Length = 25411

 Score = 25.8 bits (55), Expect = 5.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 125   PPEYLWAPAKPPEDASD 141
             PP Y+W P  PP  A D
Sbjct: 13013 PPTYVWQPQYPPTVADD 12963


>gi|338241155|gb|AFNH01002589.1| Gregarina niphandrodes asmbl.3316,
             whole genome shotgun sequence
          Length = 40236

 Score = 25.8 bits (55), Expect = 5.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 15    AALVAPATSITTYRPDWNRLRGLARGRVETCGGXQLNRL 53
             A++   A ++ T RP  +   G  RGRV+ C G Q  RL
Sbjct: 35141 ASVERRAATLPTGRP--HPATGHCRGRVQVCRGRQTGRL 35251


>gi|338240686|gb|AFNH01002823.1| Gregarina niphandrodes asmbl.3537,
            whole genome shotgun sequence
          Length = 17066

 Score = 25.4 bits (54), Expect = 7.2
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -2

Query: 2    NILLSPPPLLLLLAALVAPATSITTYRPDWNRLRGLARGRVETCGGXQLNRLKEVKA 58
            N+   PPPLLL L +L+      + +R          RGR+ +C        ++V+A
Sbjct: 5872 NLRARPPPLLLFLQSLLRQ----SLFRHSRMAADSATRGRLRSCVARVCPAARKVRA 5714


>gi|338240793|gb|AFNH01002769.1| Gregarina niphandrodes asmbl.3488,
            whole genome shotgun sequence
          Length = 7190

 Score = 25.4 bits (54), Expect = 7.2
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
 Frame = -3

Query: 27   YRPDWNRLRGLARGRVET-CGGXQLNR---LKEVKAFVTQDIQLYHNLVMKHL------P 76
            Y P W+  R  ARGR  + C G +  R     E KA+    + L  N  +         P
Sbjct: 4962 YLPTWS*PRSAARGRASSNCAGHRPARP*GPPEAKAWAPDSVALSQNCRLSRCRPRSTSP 4783

Query: 77   GADPELVLLSR 87
            G  P  V  SR
Sbjct: 4782 GPGPPRVSSSR 4750


>gi|338241195|gb|AFNH01002569.1| Gregarina niphandrodes asmbl.3299,
            whole genome shotgun sequence
          Length = 11715

 Score = 25.4 bits (54), Expect = 7.2
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = +3

Query: 100  MTRDEINALVQELGFY--RKSAPEAKVPPEYLWAPAKP 135
            +T D  N L     F   R+SAP    PP Y  AP  P
Sbjct: 2658 VTSDHWNILASTYAFMSRRESAPSRPTPPSYEKAPYWP 2771


>gi|338242858|gb|AFNH01001736.1| Gregarina niphandrodes asmbl.2534,
           whole genome shotgun sequence
          Length = 7219

 Score = 25.4 bits (54), Expect = 7.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 119 APEAKVPPEYLWAPAKPPEDASD 141
           +P   +PPE  +AP  PP   SD
Sbjct: 194 SPRPSLPPEPPYAPLSPPSPHSD 126


>gi|338241498|gb|AFNH01002416.1| Gregarina niphandrodes asmbl.3159,
             whole genome shotgun sequence
          Length = 20322

 Score = 25.0 bits (53), Expect = 9.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 3     ILLSPPPLLLLLAALVAPATSITTY 27
             I  SPP  LL L+A+ APA S   +
Sbjct: 20179 IFASPPTTLLALSAIDAPALSALAF 20253


>gi|338241500|gb|AFNH01002415.1| Gregarina niphandrodes asmbl.3158,
            whole genome shotgun sequence
          Length = 12064

 Score = 25.0 bits (53), Expect = 9.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 3    ILLSPPPLLLLLAALVAPATSITTY 27
            I  SPP  LL L+A+ APA S   +
Sbjct: 6420 IFASPPTTLLALSAIDAPALSALAF 6346


>gi|338243612|gb|AFNH01001359.1| Gregarina niphandrodes asmbl.2189,
            whole genome shotgun sequence
          Length = 2344

 Score = 25.0 bits (53), Expect = 9.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 3    ILLSPPPLLLLLAALVAPATSITTY 27
            I  SPP  LL L+A+ APA S   +
Sbjct: 2154 IFASPPTTLLALSAIDAPALSALAF 2228


>gi|338245805|gb|AFNH01000263.1| Gregarina niphandrodes asmbl.1234,
           whole genome shotgun sequence
          Length = 1157

 Score = 25.0 bits (53), Expect = 9.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 5   LSPPPLLLLLAALVAPATSITT 26
           LSPPPLL+ LA ++   T + T
Sbjct: 491 LSPPPLLVRLAGMLLGFTGLPT 426


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.318    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,405,475
Number of Sequences: 3680
Number of extensions: 52343
Number of successful extensions: 421
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of query: 145
length of database: 5,120,956
effective HSP length: 85
effective length of query: 60
effective length of database: 4,808,156
effective search space: 288489360
effective search space used: 288489360
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)