TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Rattus novergicus (145 letters) Database: F.cylindrus/genome.fa 271 sequences; 80,540,407 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_7 32 0.35 scaffold_30 30 1.0 scaffold_44 29 3.0 scaffold_8 29 3.0 scaffold_50 28 5.1 scaffold_3 28 5.1 scaffold_2 28 5.1 scaffold_102 27 8.6 scaffold_16 27 8.6 scaffold_14 27 8.6 >scaffold_7 Length = 2770240 Score = 32.0 bits (71), Expect = 0.35 Identities = 20/44 (45%), Positives = 24/44 (54%) Frame = +3 Query: 3 ILLSPPPLLLLLAALVAPATSITTYRPDWNRLRGLARGRVETCG 46 +LL PPPLLLLL LV P + R W + L+ RVE G Sbjct: 296313 MLLYPPPLLLLLLLLVIPPFTSRLLRERW---KLLSSDRVELTG 296435 >scaffold_30 Length = 728828 Score = 30.4 bits (67), Expect = 1.0 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = -3 Query: 1 MNILLSPPPLLLLLAALVAPATSITTYRPDWNRLRGLARGRVETCG 46 + IL S PPLL LL ++ + T +NRL R R+ G Sbjct: 452424 ITILPSAPPLLRLLQKIIVEMMASATIAAKYNRLMTRTRNRISNTG 452287 >scaffold_44 Length = 512631 Score = 28.9 bits (63), Expect = 3.0 Identities = 12/16 (75%), Positives = 16/16 (100%) Frame = +1 Query: 1 MNILLSPPPLLLLLAA 16 ++I+LSPPPLLLL+AA Sbjct: 136762 VSIILSPPPLLLLMAA 136809 >scaffold_8 Length = 2651504 Score = 28.9 bits (63), Expect = 3.0 Identities = 12/16 (75%), Positives = 16/16 (100%) Frame = -2 Query: 1 MNILLSPPPLLLLLAA 16 ++I+LSPPPLLLL+AA Sbjct: 2023099 VSIILSPPPLLLLMAA 2023052 >scaffold_50 Length = 420730 Score = 28.1 bits (61), Expect = 5.1 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = +2 Query: 4 LLSPPPLLLLLAALVAPATSITTYRPD--WNRLRGLARGRVETCGGXQLNRLKEVKAFVT 61 L+ P PLLLLL+A ATS+TT R WN L L L + E++ F+ Sbjct: 91001 LMPPLPLLLLLSA----ATSLTTMRVSVMWNFLHHL----------HLLIK*NELQRFIP 91138 Query: 62 QDIQL 66 Q QL Sbjct: 91139 QRFQL 91153 >scaffold_3 Length = 3437899 Score = 28.1 bits (61), Expect = 5.1 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = +3 Query: 6 SPPPLLLLLAALVAPATSITTYRP 29 SPPPLLLL+A L+ SI T P Sbjct: 2182101 SPPPLLLLVALLLVLLLSIATPTP 2182172 >scaffold_2 Length = 3822992 Score = 28.1 bits (61), Expect = 5.1 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Frame = +2 Query: 7 PPPLLLLLAALVAPATSITTYRPDWNRLRGLA----RGRVETCGG 47 PP L +LA + +P T + ++ WN R A R + C G Sbjct: 3099395 PPENLAILATMASPPTKLLSFCLSWNFFRSSAHFGSRSWIRICSG 3099529 Score = 27.7 bits (60), Expect = 6.6 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = -3 Query: 4 LLSPPPLLLLLAALVAP 20 LLSPPPLLLLL + ++P Sbjct: 1050735 LLSPPPLLLLLPSKLSP 1050685 Score = 27.3 bits (59), Expect = 8.6 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -3 Query: 7 PPPLLLLLAALVAPATSITTYRPDWNRLR 35 P LLLLL L+ T+I RP+WN R Sbjct: 2084940 PRILLLLLLLLLLFETNIQIERPNWNHCR 2084854 >scaffold_102 Length = 134685 Score = 27.3 bits (59), Expect = 8.6 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 92 LERIPLSQMTRDEINALVQELGFYRKSAP 120 +E IPLS++ R I+ V+ GF+R + P Sbjct: 10140 IELIPLSELGRPRIDVTVRISGFFRDAFP 10226 >scaffold_16 Length = 1295603 Score = 27.3 bits (59), Expect = 8.6 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +2 Query: 76 PGADPELVLLSRNYQELERIPLSQMTRDEINALVQELGFYRKSAPEAKVP 125 P +PE+V L + LE L + IN L+ +LG Y + E + P Sbjct: 413255 PPMEPEIVELIQRATFLEDKKLKDELQITINTLLIDLGMYENGSGEEQSP 413404 >scaffold_14 Length = 1349802 Score = 27.3 bits (59), Expect = 8.6 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +1 Query: 76 PGADPELVLLSRNYQELERIPLSQMTRDEINALVQELGFYRKSAPEAKVP 125 P +PE+V L + LE L + IN L+ +LG Y + E + P Sbjct: 454294 PPMEPEIVELIQRATFLEDKKLKDELQLTINTLLIDLGMYENGSEEEQSP 454443 Database: F.cylindrus/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 80,540,407 Number of sequences in database: 271 Lambda K H 0.318 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,979,840 Number of Sequences: 271 Number of extensions: 181464 Number of successful extensions: 1471 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 1274 Number of HSP's gapped (non-prelim): 476 length of query: 145 length of database: 26,846,802 effective HSP length: 96 effective length of query: 49 effective length of database: 26,820,786 effective search space: 1314218514 effective search space used: 1314218514 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (27.3 bits)