TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Rattus novergicus (145 letters) Database: D.discoideum_AX4/genome.fa 6 sequences; 33,943,072 total letters Searching......done Score E Sequences producing significant alignments: (bits) Value gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso... 29 1.4 gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso... 29 1.4 gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromoso... 27 5.2 gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos... 27 5.2 gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso... 27 6.8 >gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence Length = 6357299 Score = 28.9 bits (63), Expect = 1.4 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = -2 Query: 3 ILLSPPPLLLLLAALVAPATSITTY 27 +LL PPPLLLLL L+ ITT+ Sbjct: 3945208 LLLLPPPLLLLLLLLLILLIGITTF 3945134 Score = 26.9 bits (58), Expect = 5.2 Identities = 18/82 (21%), Positives = 35/82 (42%) Frame = +1 Query: 55 EVKAFVTQDIQLYHNLVMKHLPGADPELVLLSRNYQELERIPLSQMTRDEINALVQELGF 114 E+ FV+Q +QL N++ K ++++ L+Q+ ++N + Sbjct: 1000279 EMIRFVSQRVQLKLNVIWK-----------------PIKKLNLNQLLNQQVNQFQELQNH 1000407 Query: 115 YRKSAPEAKVPPEYLWAPAKPP 136 +K P+ K+P L PP Sbjct: 1000408 LKKQLPKNKLPLNKLLPKKLPP 1000473 >gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole genome shotgun sequence Length = 4923596 Score = 28.9 bits (63), Expect = 1.4 Identities = 22/81 (27%), Positives = 36/81 (44%) Frame = +3 Query: 49 QLNRLKEVKAFVTQDIQLYHNLVMKHLPGADPELVLLSRNYQELERIPLSQMTRDEINAL 108 Q N LKE K TQD + + N + K L N ++L++ Q + E+ Sbjct: 721857 QRNSLKEFKLKQTQDFKEFLNKLKKELKDE-------KGNKKQLQQQHKEQKKQFELTLS 722015 Query: 109 VQELGFYRKSAPEAKVPPEYL 129 QE+ F +K A + + + L Sbjct: 722016 TQEVDFQKKQARQKEEEDDIL 722078 Score = 26.9 bits (58), Expect = 5.2 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +3 Query: 3 ILLSPPPLLLLLAALVAP 20 +LL PPPLLLLL L+ P Sbjct: 2170893 LLLLPPPLLLLLLLLLPP 2170946 Score = 26.6 bits (57), Expect = 6.8 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = +3 Query: 3 ILLSPPPLLLLLAALVAP 20 ILL PPPLLL+L ++ P Sbjct: 2329677 ILLPPPPLLLILILILLP 2329730 Score = 26.6 bits (57), Expect = 6.8 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Frame = +1 Query: 35 RGLARGRVETCGGXQLNRLKEVKAFVTQD------IQLYHNLVMKHLPGADPELVLL 85 RG+ GR+ + G +LN L + + T D I Y NL+ DP+ LL Sbjct: 4102501 RGIVDGRITSIGNVKLNDLDDESNYYTSDSFVGIVIPQYTNLIQ-----LDPDFGLL 4102656 >gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole genome shotgun sequence Length = 3602379 Score = 26.9 bits (58), Expect = 5.2 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = +3 Query: 2 NILLSPPPLLLLLAALV 18 N+L SPPPLLLLL L+ Sbjct: 2169024 NLLKSPPPLLLLLLLLL 2169074 >gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole genome shotgun sequence Length = 8484197 Score = 26.9 bits (58), Expect = 5.2 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -1 Query: 3 ILLSPPPLLLLLAALVAP 20 +LL PPPLLLLL L+ P Sbjct: 3810173 LLLLPPPLLLLLLPLLLP 3810120 Score = 26.6 bits (57), Expect = 6.8 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = +3 Query: 4 LLSPPPLLLLLAALV 18 L+SPPPLLLLL LV Sbjct: 3091311 LISPPPLLLLLLPLV 3091355 Score = 26.6 bits (57), Expect = 6.8 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = -2 Query: 4 LLSPPPLLLLLAALV 18 L+SPPPLLLLL LV Sbjct: 2940475 LISPPPLLLLLLPLV 2940431 >gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole genome shotgun sequence Length = 5450249 Score = 26.6 bits (57), Expect = 6.8 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -1 Query: 87 RNYQELERIPLSQMTRDEINALVQELGFYRKSAPEAK 123 +N+Q L PLS + DEI AL+ + ++KS + K Sbjct: 2738819 KNHQSLANTPLSNIVDDEI-ALLNQWKDFKKSQEQTK 2738712 Database: D.discoideum_AX4/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 33,943,072 Number of sequences in database: 6 Lambda K H 0.318 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,173,533 Number of Sequences: 6 Number of extensions: 55808 Number of successful extensions: 533 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 383 Number of HSP's gapped (non-prelim): 297 length of query: 145 length of database: 11,314,357 effective HSP length: 91 effective length of query: 54 effective length of database: 11,313,811 effective search space: 610945794 effective search space used: 610945794 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (26.2 bits)