TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Pan troglodytes
         (145 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330850028|gb|ADNL01000575.1| Astrammina rara contig00641, who...    25   0.68 
gi|330850216|gb|ADNL01000387.1| Astrammina rara contig00421, who...    23   3.4  
gi|330850220|gb|ADNL01000383.1| Astrammina rara contig00416, who...    23   3.4  
gi|330847872|gb|ADNL01002731.1| Astrammina rara contig03220, who...    22   7.5  
gi|330849856|gb|ADNL01000747.1| Astrammina rara contig00854, who...    21   9.8  

>gi|330850028|gb|ADNL01000575.1| Astrammina rara contig00641, whole
           genome shotgun sequence
          Length = 855

 Score = 25.0 bits (53), Expect = 0.68
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -2

Query: 60  VTQDIPFYHNLVMKHLPGADPELVLLGRRYEELERIPLSEMTREEINAL 108
           VT  +P +      H PG  PE V  GRR+  L R  +    R+E+  L
Sbjct: 203 VTSRLPRFDIKAWCHPPGTPPESV*DGRRHSGLVR-SVPPRGRDELEVL 60


>gi|330850216|gb|ADNL01000387.1| Astrammina rara contig00421, whole
           genome shotgun sequence
          Length = 1448

 Score = 22.7 bits (47), Expect = 3.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 67  YHNLVMKHLPGADPELVLLGRRYEELERIPLSEMTR 102
           YH L ++ L   +  LVL+ R     + +P S + R
Sbjct: 334 YHTLHLRRLGQVELSLVLVVRHISAAQPVPQSTIPR 227


>gi|330850220|gb|ADNL01000383.1| Astrammina rara contig00416, whole
            genome shotgun sequence
          Length = 1209

 Score = 22.7 bits (47), Expect = 3.4
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +1

Query: 6    PPLALLLLLAALVA 19
            PPL LLLLL A VA
Sbjct: 1027 PPLLLLLLLYAFVA 1068


>gi|330847872|gb|ADNL01002731.1| Astrammina rara contig03220, whole
           genome shotgun sequence
          Length = 1679

 Score = 21.6 bits (44), Expect = 7.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 65  PFYHNLVMKHLP 76
           P YHNL + H P
Sbjct: 515 PVYHNLTVDHSP 550


>gi|330849856|gb|ADNL01000747.1| Astrammina rara contig00854, whole
           genome shotgun sequence
          Length = 810

 Score = 21.2 bits (43), Expect = 9.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 4   LLPPLALLLLLAALVAP 20
           LLPP+ LLL+   L+ P
Sbjct: 380 LLPPVLLLLVANVLLPP 330


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.319    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 232,917
Number of Sequences: 3231
Number of extensions: 2429
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 145
length of database: 483,365
effective HSP length: 67
effective length of query: 78
effective length of database: 266,888
effective search space: 20817264
effective search space used: 20817264
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)