TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ostreococcus tauri
         (125 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325192680|emb|FR824499.1| Albugo laibachii Nc14, genomic cont...    30   0.30 
gi|325186653|emb|FR824160.1| Albugo laibachii Nc14, genomic cont...    28   1.5  
gi|325188096|emb|FR824207.1| Albugo laibachii Nc14, genomic cont...    27   3.4  
gi|325185988|emb|FR824141.1| Albugo laibachii Nc14, genomic cont...    27   4.4  
gi|325180343|emb|FR824051.1| Albugo laibachii Nc14, genomic cont...    26   7.5  

>gi|325192680|emb|FR824499.1| Albugo laibachii Nc14, genomic contig
            CONTIG_456_NC14_v4_16186_319
          Length = 16186

 Score = 30.4 bits (67), Expect = 0.30
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 59   DVVEVGKYGDKVSVLWTHGHAPTIHMQDDKGTNVESVV 96
            D V++G+Y  +     T GH P  H    KGT +ES V
Sbjct: 9178 DSVDIGRY*IQSGTNRTSGHKPATH*MASKGTRMESQV 9065


>gi|325186653|emb|FR824160.1| Albugo laibachii Nc14, genomic contig
             CONTIG_115_NC14_v4_74376_238
          Length = 74376

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -2

Query: 39    FQSCPGXRLNRLPEIKAFIKDVVEVGKYGDKVSVLWTHGHAPTIHMQDDKGTNVESVVLT 98
             FQS P  ++  +  ++A    +  +   GD++S L    H   I  + D G+N  S++L 
Sbjct: 32492 FQSQPNYQIELIEAMRALTALLTCISYVGDELSQLMYCLHESRIFARADLGSNTFSLILV 32313

Query: 99    SE 100
              +
Sbjct: 32312 KQ 32307


>gi|325188096|emb|FR824207.1| Albugo laibachii Nc14, genomic contig
             CONTIG_162_NC14_v4_57516_227
          Length = 57516

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 20/68 (29%), Positives = 28/68 (41%)
 Frame = +2

Query: 6     RRSSASFLFAFVLFLACASSALAESATSYARAQFQSCPGXRLNRLPEIKAFIKDVVEVGK 65
             +RS ASFL A  L       A     TSY     Q C     +    +K++++   +  K
Sbjct: 29516 QRSIASFLEAKDLARLVTVRAKRHLLTSYLTLSRQVCRALSFDAEILVKSYLESFYQAAK 29695

Query: 66    YGDKVSVL 73
               DK  VL
Sbjct: 29696 SSDKSDVL 29719


>gi|325185988|emb|FR824141.1| Albugo laibachii Nc14, genomic contig
             CONTIG_96_NC14_v4_80833_226
          Length = 80833

 Score = 26.6 bits (57), Expect = 4.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 76    HGHAPTIHMQDDKGTNVESVVLTSEWTVDQVKEYLSER 113
             HG++PT+ + DD G+N  +  + S  + D  ++ L ER
Sbjct: 28649 HGYSPTMDIVDD-GSNKYARAIISSHSEDPTRQRLHER 28759


>gi|325180343|emb|FR824051.1| Albugo laibachii Nc14, genomic contig
             CONTIG_6_NC14_v4_250275_231
          Length = 250275

 Score = 25.8 bits (55), Expect = 7.5
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 67    GDKVSVLWTHGHAPTIHMQDDKGTNVESVVLTS--EWTV 103
             G ++  +W H H+P + M+++    VE   L    EW +
Sbjct: 24414 GTRLLHVWNH*HSPDLDMEEEARAMVEDTNLAM**EWDI 24530


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.318    0.130    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,377,300
Number of Sequences: 3816
Number of extensions: 54117
Number of successful extensions: 269
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of query: 125
length of database: 10,913,379
effective HSP length: 88
effective length of query: 37
effective length of database: 10,577,571
effective search space: 391370127
effective search space used: 391370127
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)