TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Gallus gallus (107 letters) Database: G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|338242515|gb|AFNH01001907.1| Gregarina niphandrodes asmbl.269... 27 1.1 gi|338239423|gb|AFNH01003454.1| Gregarina niphandrodes asmbl.793... 27 1.5 gi|338241207|gb|AFNH01002563.1| Gregarina niphandrodes asmbl.329... 27 1.5 gi|338242205|gb|AFNH01002062.1| Gregarina niphandrodes asmbl.283... 26 1.9 gi|338241155|gb|AFNH01002589.1| Gregarina niphandrodes asmbl.331... 26 2.5 gi|338242333|gb|AFNH01001998.1| Gregarina niphandrodes asmbl.277... 25 3.3 gi|338242680|gb|AFNH01001825.1| Gregarina niphandrodes asmbl.261... 25 5.5 gi|338246260|gb|AFNH01000035.1| Gregarina niphandrodes asmbl.102... 25 5.5 gi|338241524|gb|AFNH01002403.1| Gregarina niphandrodes asmbl.314... 24 7.2 gi|338242658|gb|AFNH01001836.1| Gregarina niphandrodes asmbl.262... 24 9.5 >gi|338242515|gb|AFNH01001907.1| Gregarina niphandrodes asmbl.2690, whole genome shotgun sequence Length = 60929 Score = 26.9 bits (58), Expect = 1.1 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +1 Query: 37 PLYHNLEMKHLPGADPELVLLSFRYEELERIPLSDMTREEINQL 80 PL HN E+ H P ++ + FR E + +P +++ +E N L Sbjct: 49993 PLIHNAELWHFPAYLEKMKVYVFRNESV--VPNANINPDEYNLL 50118 >gi|338239423|gb|AFNH01003454.1| Gregarina niphandrodes asmbl.793, whole genome shotgun sequence Length = 2663 Score = 26.6 bits (57), Expect = 1.5 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +2 Query: 80 LVQELGFYRKETPEAPVPEE 99 LVQELG +E PE +PE+ Sbjct: 1103 LVQELGIPEQEIPEQEIPEQ 1162 >gi|338241207|gb|AFNH01002563.1| Gregarina niphandrodes asmbl.3293, whole genome shotgun sequence Length = 27363 Score = 26.6 bits (57), Expect = 1.5 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Frame = -3 Query: 2 ERRPPRGLARGKVETCGGXRLSRLPEVKAFVSQDIPL-YHNLEMK----HLPGADPELVL 56 E+ PP+G RG+ T G +LP + +++PL + L + H+PG L Sbjct: 12046 EKLPPKGNYRGRETTAEG----KLPRKGNYRGKELPLGWAGLLPRGGAGHVPGVLCGLFC 11879 Query: 57 LSFRYEELERIP 68 L F E ER P Sbjct: 11878 LRFFVEIWERDP 11843 >gi|338242205|gb|AFNH01002062.1| Gregarina niphandrodes asmbl.2833, whole genome shotgun sequence Length = 12989 Score = 26.2 bits (56), Expect = 1.9 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -1 Query: 2 ERRPPRGLARGKVETCGGXR 21 E RPPRG RG + CG R Sbjct: 1403 EERPPRGPGRGGLGLCGPVR 1344 >gi|338241155|gb|AFNH01002589.1| Gregarina niphandrodes asmbl.3316, whole genome shotgun sequence Length = 40236 Score = 25.8 bits (55), Expect = 2.5 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +2 Query: 5 PPRGLARGKVETCGGXRLSRLP 26 P G RG+V+ C G + RLP Sbjct: 35189 PATGHCRGRVQVCRGRQTGRLP 35254 >gi|338242333|gb|AFNH01001998.1| Gregarina niphandrodes asmbl.2773, whole genome shotgun sequence Length = 20732 Score = 25.4 bits (54), Expect = 3.3 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +1 Query: 62 EELERIPLSDMTREEINQLVQELGFYRKETPEA 94 +E E+ PL + E ++LVQEL ++ PE+ Sbjct: 13213 QEPEQDPLQEHQPESEHELVQELELQQRHEPES 13311 >gi|338242680|gb|AFNH01001825.1| Gregarina niphandrodes asmbl.2615, whole genome shotgun sequence Length = 10699 Score = 24.6 bits (52), Expect = 5.5 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Frame = +3 Query: 26 PEVKAFVSQDIPLYHNLEMKHLPGADPELVLLSFRYEE-LERIPLSDMTREEINQLVQEL 84 P +KA + + + L H+L K + D LLS EE LE I +D +L+ + Sbjct: 8007 PGIKARLGEGLILLHDLPDKTVGWMDQSGALLSLSAEELLEAIVSNDALGTRFCELIADC 8186 Query: 85 GF 86 F Sbjct: 8187 LF 8192 >gi|338246260|gb|AFNH01000035.1| Gregarina niphandrodes asmbl.1029, whole genome shotgun sequence Length = 718 Score = 24.6 bits (52), Expect = 5.5 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = -2 Query: 3 RRPPRGLARGKVETCGGXRLSR 24 R PP G RG+VE G R R Sbjct: 693 RAPPVGRRRGRVEVAGDSRCPR 628 >gi|338241524|gb|AFNH01002403.1| Gregarina niphandrodes asmbl.3147, whole genome shotgun sequence Length = 10973 Score = 24.3 bits (51), Expect = 7.2 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 2/19 (10%) Frame = +1 Query: 3 RRPPRG--LARGKVETCGG 19 RR RG LARG+ E CGG Sbjct: 844 RRDRRGGRLARGEAEACGG 900 >gi|338242658|gb|AFNH01001836.1| Gregarina niphandrodes asmbl.2625, whole genome shotgun sequence Length = 5524 Score = 23.9 bits (50), Expect = 9.5 Identities = 13/36 (36%), Positives = 16/36 (44%) Frame = +1 Query: 1 IERRPPRGLARGKVETCGGXRLSRLPEVKAFVSQDI 36 +E G G CG R+ RLP V VS D+ Sbjct: 1087 VETEAAAGEGGGVFGGCGFARVVRLPCVSTVVSSDL 1194 Database: G.niphandrodes/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.318 0.139 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,090,914 Number of Sequences: 3680 Number of extensions: 27610 Number of successful extensions: 130 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 127 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 130 length of query: 107 length of database: 5,120,956 effective HSP length: 80 effective length of query: 27 effective length of database: 4,826,556 effective search space: 130317012 effective search space used: 130317012 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)