TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Gallus gallus
         (107 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso...    26   4.1  
gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos...    26   5.4  

>gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole
               genome shotgun sequence
          Length = 4923596

 Score = 26.2 bits (56), Expect = 4.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 54      LVLLSFRYEELERIPLSDMTREEINQLVQELGFYRKETPE 93
               L+LL   +EE + +PL +   EE N+ V+   ++   + E
Sbjct: 1355917 LLLLLLFFEEFDLLPLLEEENEEENEEVESSTYFNSSSSE 1356036


>gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2,
               whole genome shotgun sequence
          Length = 8484197

 Score = 25.8 bits (55), Expect = 5.4
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = -3

Query: 43      EMKHLPGADPELVLLSFRYEELERIPLSDMTREEINQLVQEL 84
               ++K+L   +    +++   EEL+ + LS+M  + +NQL+ ++
Sbjct: 2059173 DIKYLSEREQYKDIINEIKEELKLVKLSNMDEDRVNQLISKM 2059048


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.318    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,555,912
Number of Sequences: 6
Number of extensions: 24300
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 41
length of query: 107
length of database: 11,314,357
effective HSP length: 82
effective length of query: 25
effective length of database: 11,313,865
effective search space: 282846625
effective search space used: 282846625
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)