TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Gallus gallus
         (107 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330847872|gb|ADNL01002731.1| Astrammina rara contig03220, who...    25   0.31 
gi|330850276|gb|ADNL01000327.1| Astrammina rara contig00346, who...    25   0.31 
gi|330849874|gb|ADNL01000729.1| Astrammina rara contig00833, who...    25   0.52 
gi|330850203|gb|ADNL01000400.1| Astrammina rara contig00437, who...    22   2.6  
gi|330850216|gb|ADNL01000387.1| Astrammina rara contig00421, who...    21   5.8  
gi|330849558|gb|ADNL01001045.1| Astrammina rara contig01227, who...    21   7.6  
gi|330849777|gb|ADNL01000826.1| Astrammina rara contig00953, who...    21   7.6  
gi|330849178|gb|ADNL01001425.1| Astrammina rara contig01687, who...    20   9.9  
gi|330850127|gb|ADNL01000476.1| Astrammina rara contig00527, who...    20   9.9  

>gi|330847872|gb|ADNL01002731.1| Astrammina rara contig03220, whole
           genome shotgun sequence
          Length = 1679

 Score = 25.4 bits (54), Expect = 0.31
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 18  GGXRLSRLPEVKAFVSQDIPLYHNLEMKHLP 48
           GG   +  P+         P+YHNL + H P
Sbjct: 458 GGVVTAEAPQTSDMCLSQSPVYHNLTVDHSP 550


>gi|330850276|gb|ADNL01000327.1| Astrammina rara contig00346, whole
           genome shotgun sequence
          Length = 477

 Score = 25.4 bits (54), Expect = 0.31
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 16/84 (19%)
 Frame = +2

Query: 24  RLPEVKAFVSQDIPLYHNLEMKHLPGADPELVLLSFRYEELERI---------------- 67
           + P  K ++ +    Y+NL +     A+ + + LSF   E  ++                
Sbjct: 86  QFPTFKYYIKETSQEYYNLALDRFYNAEDDNLWLSFPSAERNKVAEGDFITLKKEHDSVN 265

Query: 68  PLSDMTREEINQLVQELGFYRKET 91
           P+++  R +I  +  E   Y KET
Sbjct: 266 PVTEEARYKIIAIENEAPLYLKET 337


>gi|330849874|gb|ADNL01000729.1| Astrammina rara contig00833, whole
           genome shotgun sequence
          Length = 718

 Score = 24.6 bits (52), Expect = 0.52
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 38  LYHNLEMKHLPGADPELVLLSFRYEELE 65
           L+H +  + LPGA P L   + + E +E
Sbjct: 706 LFHKVSKRFLPGAPPPLTPATVK*ESIE 623


>gi|330850203|gb|ADNL01000400.1| Astrammina rara contig00437, whole
           genome shotgun sequence
          Length = 424

 Score = 22.3 bits (46), Expect = 2.6
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 79  QLVQELGFYRKETPE--APVPEEFQ 101
           Q + + G+YR +TP+    +P +FQ
Sbjct: 332 QSIPQFGYYRAQTPK*NQKMPTKFQ 406


>gi|330850216|gb|ADNL01000387.1| Astrammina rara contig00421, whole
           genome shotgun sequence
          Length = 1448

 Score = 21.2 bits (43), Expect = 5.8
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 39  YHNLEMKHLPGADPELVLLSFRYEELERIPLSDMTR 74
           YH L ++ L   +  LVL+       + +P S + R
Sbjct: 334 YHTLHLRRLGQVELSLVLVVRHISAAQPVPQSTIPR 227


>gi|330849558|gb|ADNL01001045.1| Astrammina rara contig01227, whole
           genome shotgun sequence
          Length = 348

 Score = 20.8 bits (42), Expect = 7.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 22  LSRLPEVKAFVSQDIPLYHNL 42
           L  L E+  FVS DIP+++ +
Sbjct: 185 LRNLYELYKFVSIDIPIHNGI 123


>gi|330849777|gb|ADNL01000826.1| Astrammina rara contig00953, whole
           genome shotgun sequence
          Length = 843

 Score = 20.8 bits (42), Expect = 7.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 4   RPPRGLARGKVETCGGXRLSRL 25
           R   GL RG+ E CG  +  R+
Sbjct: 767 RECEGLLRGRFEQCGDIKEIRV 702


>gi|330849178|gb|ADNL01001425.1| Astrammina rara contig01687, whole
           genome shotgun sequence
          Length = 430

 Score = 20.4 bits (41), Expect = 9.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 21  RLSRLPEVKAFVSQDIPLY 39
           RLS  P VK FVS  +  Y
Sbjct: 342 RLSAEPLVKNFVSPQVKYY 398


>gi|330850127|gb|ADNL01000476.1| Astrammina rara contig00527,
          whole genome shotgun sequence
          Length = 239

 Score = 20.4 bits (41), Expect = 9.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 26 PEVKAFVSQDIPLYHNL 42
          P   + ++Q IP YH+L
Sbjct: 25 PRTASKLAQQIPAYHSL 75


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.318    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,762
Number of Sequences: 3231
Number of extensions: 1480
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 107
length of database: 483,365
effective HSP length: 63
effective length of query: 44
effective length of database: 279,812
effective search space: 12311728
effective search space used: 12311728
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 41 (20.4 bits)