TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000017_1.0 # Protein # Selenoprotein M (SelM) # Homo
sapiens # Complete
         (145 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338240424|gb|AFNH01002954.1| Gregarina niphandrodes asmbl.365...    28   0.85 
gi|338240559|gb|AFNH01002886.1| Gregarina niphandrodes asmbl.359...    28   1.4  
gi|338240545|gb|AFNH01002893.1| Gregarina niphandrodes asmbl.360...    27   1.9  
gi|338242558|gb|AFNH01001886.1| Gregarina niphandrodes asmbl.267...    27   1.9  
gi|338241153|gb|AFNH01002590.1| Gregarina niphandrodes asmbl.331...    27   2.5  
gi|338242608|gb|AFNH01001861.1| Gregarina niphandrodes asmbl.264...    27   2.5  
gi|338241005|gb|AFNH01002664.1| Gregarina niphandrodes asmbl.338...    27   3.2  
gi|338240781|gb|AFNH01002775.1| Gregarina niphandrodes asmbl.349...    26   4.2  
gi|338241656|gb|AFNH01002337.1| Gregarina niphandrodes asmbl.308...    26   4.2  
gi|338240903|gb|AFNH01002715.1| Gregarina niphandrodes asmbl.343...    26   5.5  
gi|338241508|gb|AFNH01002411.1| Gregarina niphandrodes asmbl.315...    26   5.5  
gi|338242281|gb|AFNH01002024.1| Gregarina niphandrodes asmbl.279...    26   5.5  
gi|338239102|gb|AFNH01003613.1| Gregarina niphandrodes asmbl.937...    25   9.4  
gi|338239768|gb|AFNH01003282.1| Gregarina niphandrodes asmbl.638...    25   9.4  
gi|338241077|gb|AFNH01002628.1| Gregarina niphandrodes asmbl.335...    25   9.4  
gi|338241324|gb|AFNH01002503.1| Gregarina niphandrodes asmbl.323...    25   9.4  
gi|338241586|gb|AFNH01002372.1| Gregarina niphandrodes asmbl.311...    25   9.4  
gi|338242373|gb|AFNH01001978.1| Gregarina niphandrodes asmbl.275...    25   9.4  
gi|338242858|gb|AFNH01001736.1| Gregarina niphandrodes asmbl.253...    25   9.4  
gi|338243674|gb|AFNH01001328.1| Gregarina niphandrodes asmbl.216...    25   9.4  

>gi|338240424|gb|AFNH01002954.1| Gregarina niphandrodes asmbl.3657,
            whole genome shotgun sequence
          Length = 20249

 Score = 28.5 bits (62), Expect = 0.85
 Identities = 16/26 (61%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 84   LLGRRY-EELERIPLSEMTREEINAL 108
            LLG+R  EELE  PLSE  R E+N L
Sbjct: 9283 LLGKRVAEELEMKPLSENLRSELNVL 9360


>gi|338240559|gb|AFNH01002886.1| Gregarina niphandrodes asmbl.3595,
             whole genome shotgun sequence
          Length = 40676

 Score = 27.7 bits (60), Expect = 1.4
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 7     PLALLLLLAALVAPATAATAYRPDWNRLSGLTRARVETCGGXQ--LNRLK 54
             P  L +  +  +APA AATA      RLS  TR +  T    Q   NRLK
Sbjct: 19077 PC*LAIATST*LAPAPAATADSASIGRLSTFTRIKSRTLNDPQGTFNRLK 19226


>gi|338240545|gb|AFNH01002893.1| Gregarina niphandrodes asmbl.3600,
            whole genome shotgun sequence
          Length = 10032

 Score = 27.3 bits (59), Expect = 1.9
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -2

Query: 10   LLLLLAALVAPATAATAYRPDWNR---LSGLTRAR 41
            +L LLAA  +P+T A  Y P  N    ++G+TR R
Sbjct: 1325 VLQLLAAQTSPSTTAPPYLPTTNESWLVNGMTRTR 1221


>gi|338242558|gb|AFNH01001886.1| Gregarina niphandrodes asmbl.2671,
            whole genome shotgun sequence
          Length = 13334

 Score = 27.3 bits (59), Expect = 1.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 15   AALVAPATAATAYRPDWNRLSGLTRARVETCGGXQLNRLKEVKAFVT 61
            +A+ APAT+ T Y+P W + S +      T     L +   V+A  T
Sbjct: 1489 SAVQAPATSTTTYQP-WGQTSAVQAPETSTTAHQPLTQTSAVQAPTT 1352


>gi|338241153|gb|AFNH01002590.1| Gregarina niphandrodes asmbl.3317,
             whole genome shotgun sequence
          Length = 30309

 Score = 26.9 bits (58), Expect = 2.5
 Identities = 25/101 (24%), Positives = 37/101 (36%)
 Frame = +2

Query: 21    ATAATAYRPDWNRLSGLTRARVETCGGXQLNRLKEVKAFVTQDIPFYHNLVMKHLPGADP 80
             A+   +  P W   S L R     C G  L  L+       QD P + + +     G  P
Sbjct: 11933 ASLVDSESPMWLLSSALMRCSASVCMGSFLRVLR------LQDSPKFRSTLKVFREGWTP 12094

Query: 81    ELVLLGRRYEELERIPLSEMTREEINALVQELGFYRKAAPD 121
              L           R+P SE  R+ ++   Q   +  +A PD
Sbjct: 12095 ALT----------RLPDSEHARKLVSVCSQATQWLSRAVPD 12187


>gi|338242608|gb|AFNH01001861.1| Gregarina niphandrodes asmbl.2648,
             whole genome shotgun sequence
          Length = 34698

 Score = 26.9 bits (58), Expect = 2.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 117   KAAPDAQVPPEYVWAPAKPPEETSDHADL 145
             K A  A  PP     P KPPEE ++ A L
Sbjct: 21247 KEAAAASSPPAPKTEPEKPPEEAAERASL 21161


>gi|338241005|gb|AFNH01002664.1| Gregarina niphandrodes asmbl.3389,
             whole genome shotgun sequence
          Length = 25411

 Score = 26.6 bits (57), Expect = 3.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 125   PPEYVWAPAKPPEETSDH 142
             PP YVW P  PP    D+
Sbjct: 13013 PPTYVWQPQYPPTVADDY 12960


>gi|338240781|gb|AFNH01002775.1| Gregarina niphandrodes asmbl.3494,
            whole genome shotgun sequence
          Length = 36679

 Score = 26.2 bits (56), Expect = 4.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -1

Query: 3    LLLPPLALLLLLAALVAPATAAT---AYRPDWNRLSGL 37
            ++LPPL  + L  + + P        A +PDWN  SGL
Sbjct: 4384 VILPPLYRIQLPFSCIPPLLTLVQLLATKPDWNTPSGL 4271


>gi|338241656|gb|AFNH01002337.1| Gregarina niphandrodes asmbl.3083,
             whole genome shotgun sequence
          Length = 53849

 Score = 26.2 bits (56), Expect = 4.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 109   VQELGFYRKAAPDAQVPPEYVWAPAKPPEETSDHA 143
             V E   YR AAPD++    + W     P    DHA
Sbjct: 22367 VSEQSRYRGAAPDSEEDDPFSWPVGLCPRWQFDHA 22471


>gi|338240903|gb|AFNH01002715.1| Gregarina niphandrodes asmbl.3434,
             whole genome shotgun sequence
          Length = 17044

 Score = 25.8 bits (55), Expect = 5.5
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 4     LLPPLALLLLLAALVAPA 21
             LLPPL LLLL   L+ PA
Sbjct: 16754 LLPPLLLLLLFPVLLLPA 16701


>gi|338241508|gb|AFNH01002411.1| Gregarina niphandrodes asmbl.3154,
             whole genome shotgun sequence
          Length = 11819

 Score = 25.8 bits (55), Expect = 5.5
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
 Frame = +1

Query: 64    IPFYHNLVMKHLPGADPELVLLGRRYEELERIPL------SEMTREEINALVQELGFYRK 117
             +P     VM  L G +PE+ +  +  ++LE          S  T+EEI +LV  L   R 
Sbjct: 10609 LPATWGAVMDSL-GHEPEIQMADQYRQDLEAQAAQCQDGGSNWTKEEITSLVAHLIAKRT 10785

Query: 118   AAPD 121
             A PD
Sbjct: 10786 AVPD 10797


>gi|338242281|gb|AFNH01002024.1| Gregarina niphandrodes asmbl.2797,
            whole genome shotgun sequence
          Length = 14807

 Score = 25.8 bits (55), Expect = 5.5
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +1

Query: 32   NRLSGLTRARVETCGGXQLNRLKEVKAFVTQDIPFYHNLVMKHLPGADPEL 82
            +R S +T   VETC G +L R     A  T   P    L+ +      P L
Sbjct: 8818 SRRSAITAVPVETCRGKKLERTAPPAASATWPSPLAKWLLKRTREATTPHL 8970


>gi|338239102|gb|AFNH01003613.1| Gregarina niphandrodes asmbl.937,
           whole genome shotgun sequence
          Length = 827

 Score = 25.0 bits (53), Expect = 9.4
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +2

Query: 1   MSLLLPPLALLLLLAALVAPATA 23
           M  L P   LL LLA LVAP TA
Sbjct: 245 MPSLQPQNPLLYLLAVLVAPVTA 313


>gi|338239768|gb|AFNH01003282.1| Gregarina niphandrodes asmbl.638,
            whole genome shotgun sequence
          Length = 5622

 Score = 25.0 bits (53), Expect = 9.4
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -3

Query: 35   SGLTRARVETCGGXQLNRLKEVKAFVTQDIPFYHNLVMKHLP 76
            SGLTR  +    G  +   +    F T D+  Y  L + H P
Sbjct: 3688 SGLTRVSISRRPGPTVQSPEPADCFGTHDLKAYRLLKVSHRP 3563


>gi|338241077|gb|AFNH01002628.1| Gregarina niphandrodes asmbl.3353,
            whole genome shotgun sequence
          Length = 13398

 Score = 25.0 bits (53), Expect = 9.4
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = -2

Query: 72   MKHLPGADPELV----LLGRRYEELERIPLSEMTREEINALVQELGFYRKAAPDAQVPPE 127
            ++H+   + +LV    +L   +  LER  +    R+ +      +   RKA    +   +
Sbjct: 7652 IRHVESQEDDLVRREMILADAFRSLERDAIELDQRQRL------IEKERKALQTEKREFQ 7491

Query: 128  YVWAPAKPPEETSDH 142
            ++WA ++ P+ TSD+
Sbjct: 7490 HLWARSRQPQSTSDY 7446


>gi|338241324|gb|AFNH01002503.1| Gregarina niphandrodes asmbl.3237,
            whole genome shotgun sequence
          Length = 4518

 Score = 25.0 bits (53), Expect = 9.4
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 4    LLPPLALLLLLAALVAPATAATAYRPDWNRLSGLTRARVE 43
            L P ++  LLL  L A    A    P W  L G   AR++
Sbjct: 3253 LKPTVSCPLLLTVLAAQNRWAPCLVPTWQTLEGSKEARLQ 3134


>gi|338241586|gb|AFNH01002372.1| Gregarina niphandrodes asmbl.3116,
            whole genome shotgun sequence
          Length = 12221

 Score = 25.0 bits (53), Expect = 9.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 28   RPDWNRLSGLTRARVETC 45
            RP+W R+SG  +A++ +C
Sbjct: 7622 RPNWRRVSGRRQAQLASC 7675


>gi|338242373|gb|AFNH01001978.1| Gregarina niphandrodes asmbl.2755,
             whole genome shotgun sequence
          Length = 32483

 Score = 25.0 bits (53), Expect = 9.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 28    RPDWNRLSGLTRARVETCGG 47
             RP   R+SGL R RV  C G
Sbjct: 12669 RPTSTRVSGLPRTRVRRCPG 12610


>gi|338242858|gb|AFNH01001736.1| Gregarina niphandrodes asmbl.2534,
           whole genome shotgun sequence
          Length = 7219

 Score = 25.0 bits (53), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 119 APDAQVPPEYVWAPAKPPEETSD 141
           +P   +PPE  +AP  PP   SD
Sbjct: 194 SPRPSLPPEPPYAPLSPPSPHSD 126


>gi|338243674|gb|AFNH01001328.1| Gregarina niphandrodes asmbl.2160,
           whole genome shotgun sequence
          Length = 1291

 Score = 25.0 bits (53), Expect = 9.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 87  RRYEELERIPLSEMTREEINALVQELGFYRKAAPDAQVPP 126
           R Y +L+   L  + RE +          R+A PD+Q PP
Sbjct: 491 RHYRQLQHKQLERLRREHL----------RRAGPDSQRPP 580


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.319    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,226,976
Number of Sequences: 3680
Number of extensions: 48202
Number of successful extensions: 346
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of query: 145
length of database: 5,120,956
effective HSP length: 85
effective length of query: 60
effective length of database: 4,808,156
effective search space: 288489360
effective search space used: 288489360
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)