TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= seed9complete.gi|122131144|sp|A0APL6|A0APL6_DROME CG7484 protein (178 letters) Database: D.discoideum_AX4/genome.fa 6 sequences; 33,943,072 total letters Searching......done Score E Sequences producing significant alignments: (bits) Value gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso... 62 3e-10 gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso... 29 1.6 gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso... 28 2.8 gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromoso... 27 6.2 gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos... 27 6.2 >gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole genome shotgun sequence Length = 4923596 Score = 61.6 bits (148), Expect = 3e-10 Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 45/184 (24%) Frame = -1 Query: 5 AIFLLLALS-CQQIQAELTAAD-CRSLGFIKAQLMCSSCEKLDDFGLDTIK--------- 53 AIFL + ++ CQ + + T+A C LGF A L+CS+C+ +F D+ K Sbjct: 1140416 AIFLCILINDCQGVSSPGTSASSCHELGFTDA-LLCSTCKDFAEFVGDSGK*FLKYLSFF 1140240 Query: 54 ----------------------------------PQCKQCCTLDQQPAAQRTYAKAILEV 79 +C CC+ ++ ++TY L V Sbjct: 1140239 FFFFFFYLFFFIIFFFFFF*HFLTFFKKKKKAFGHECSICCS-EESEKVKKTYQSVSLVV 1140063 Query: 80 CTCKFRAYPQIQAFIQSGRPAKFPNLQIKYVRGLDPVVKLLDASGKVQETLSITKWNTDT 139 C + A+PQI+ FI + + + L +KY G +P + L+D+ GK +E ++I W + Sbjct: 1140062 CQ*RLGAHPQIKEFI-NNKAKLYSKLSVKYENGANPRLTLVDSEGK-KEDINIESWKLEN 1139889 Query: 140 VEEF 143 +EE+ Sbjct: 1139888 LEEY 1139877 >gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole genome shotgun sequence Length = 5450249 Score = 29.3 bits (64), Expect = 1.6 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = -1 Query: 124 GKVQETLSITKWNTDTVEEFFETHLAKDGAGKNSYSVVEDADGDDDED 171 G++ + + + ++D EE E DG+ +S D D DDD+D Sbjct: 2711945 GQIDDAIINDEQDSDDEEEEVENTNDSDGSSSSSEDDQNDVDDDDDDD 2711802 Score = 27.3 bits (59), Expect = 6.2 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%) Frame = -2 Query: 120 LDASGKVQETLSITKWNT-DTVEEFFETHLAK--DGAGKNSYSVVEDADGDDDEDYLRTN 176 ++ +G + ++ +I WN D +E + H+ K + GKN Y + D D +E + +N Sbjct: 5446186 MNEAGLIVDSFNIEDWNLGDYTQE--DDHINKFCEKIGKNEYDLERDFQEDLNELSINSN 5446013 Query: 177 RI 178 R+ Sbjct: 5446012 RL 5446007 >gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence Length = 6357299 Score = 28.5 bits (62), Expect = 2.8 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = +2 Query: 118 KLLDASGKVQETLSITKWNTDTVEEFFETHLAKDGAGKNSYSVVEDADGDDDEDYLRT 175 K D G +E I K++ DT+E+ T + K+ N+Y+ D DDE +R+ Sbjct: 6221597 KSCDLKGAGEEFYPI-KYHRDTLEQ--RTKILKESVQSNNYTFPVSLDCQDDESIVRS 6221761 Score = 27.3 bits (59), Expect = 6.2 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = +2 Query: 124 GKVQETLSITKWNTDTVEEFFETHLAKDGAGKNSYSVVEDADGDDDED 171 G + S+ WN V F+E ++D N+ + + D DDD+D Sbjct: 5954930 GSISHDFSLKFWN---VASFYEEDESEDADSANANANEIENDDDDDDD 5955064 Score = 26.9 bits (58), Expect = 8.1 Identities = 10/33 (30%), Positives = 19/33 (57%) Frame = -3 Query: 139 TVEEFFETHLAKDGAGKNSYSVVEDADGDDDED 171 T++E+F+ L + N Y + E D DD+++ Sbjct: 5913240 TIDEYFKKELISETYKTNPYGINEKNDNDDNDN 5913142 >gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole genome shotgun sequence Length = 3602379 Score = 27.3 bits (59), Expect = 6.2 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = -1 Query: 79 VCTCKFRAYPQIQAFIQSGRPAKFPNLQIKYVRGLD-PVVKLLD 121 VC C R + ++ +IQS R K P + K G+ P++K+++ Sbjct: 2755569 VCPCSSRFF*ILRQWIQSIRQIKMPKYKRKMCIGMSKPLIKMIN 2755438 Score = 26.9 bits (58), Expect = 8.1 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = +2 Query: 150 KDGAGKNSYSVVEDADGDDDEDYL 173 ++G G+N +D D DDD++Y+ Sbjct: 1688330 EEGEGENDQEENDDDDNDDDDEYI 1688401 Score = 26.9 bits (58), Expect = 8.1 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +2 Query: 79 VCTCKFRAYPQIQAFIQSGRPAKFPNLQIKY-VRGLDPVVKLLD 121 VC C R + ++ +IQS R K P + K ++ P++K+++ Sbjct: 2601785 VCPCSSRLF*ILRQWIQSSRQIKMPKYK*KMCIKMSKPLIKMIN 2601916 >gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole genome shotgun sequence Length = 8484197 Score = 27.3 bits (59), Expect = 6.2 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = +2 Query: 39 SSCEKLDDFGLDTIKPQCKQCCTLDQQPAAQRT 71 S C K+ DF + + CKQ TLD + T Sbjct: 6786014 SGCMKITDFAIHELLQNCKQLHTLDLRKCVNLT 6786112 Score = 26.9 bits (58), Expect = 8.1 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +3 Query: 149 AKDGAGKNSYSVVEDADGDDDED 171 AK AGK++ S +D D DDD+D Sbjct: 2109399 AKKSAGKDTESDDDDDDDDDDDD 2109467 Database: D.discoideum_AX4/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 33,943,072 Number of sequences in database: 6 Lambda K H 0.322 0.135 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,613,228 Number of Sequences: 6 Number of extensions: 75102 Number of successful extensions: 480 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 307 Number of HSP's gapped (non-prelim): 394 length of query: 178 length of database: 11,314,357 effective HSP length: 94 effective length of query: 84 effective length of database: 11,313,793 effective search space: 950358612 effective search space used: 950358612 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (26.6 bits)