TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|241685802|ref|XP_002412809.1| salivary selenoprotein precursor, putative [Ixodes scapularis] (150 letters) Database: S.arctica/genome.fa 15,618 sequences; 121,588,341 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.5711 of Sphaeroforma arctica JP610 29 3.4 supercont1.2339 of Sphaeroforma arctica JP610 29 3.4 supercont1.1567 of Sphaeroforma arctica JP610 29 3.4 supercont1.2202 of Sphaeroforma arctica JP610 29 4.5 supercont1.4520 of Sphaeroforma arctica JP610 28 5.9 supercont1.83 of Sphaeroforma arctica JP610 28 5.9 supercont1.1656 of Sphaeroforma arctica JP610 28 7.6 supercont1.6863 of Sphaeroforma arctica JP610 28 10.0 supercont1.6171 of Sphaeroforma arctica JP610 28 10.0 supercont1.67 of Sphaeroforma arctica JP610 28 10.0 >supercont1.5711 of Sphaeroforma arctica JP610 Length = 1872 Score = 29.3 bits (64), Expect = 3.4 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +2 Query: 42 RGLAAFDLDLLRDGCHRCCAHTQD 65 R + A D ++ + CH CC+HTQ+ Sbjct: 284 RNIVASDQNVQQARCHMCCSHTQN 355 >supercont1.2339 of Sphaeroforma arctica JP610 Length = 7266 Score = 29.3 bits (64), Expect = 3.4 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Frame = +2 Query: 55 GCHRCCAHTQDRDAPKRYPRAVLEVC--ACKFGH 86 G +RC HT RD P ++ R + E C FGH Sbjct: 1103 GLYRCL*HTNHRDLPTQHTRDLYEPAQVLCWFGH 1204 >supercont1.1567 of Sphaeroforma arctica JP610 Length = 13495 Score = 29.3 bits (64), Expect = 3.4 Identities = 20/53 (37%), Positives = 22/53 (41%) Frame = +2 Query: 40 SCRGLAAFDLDLLRDGCHRCCAHTQDRDAPKRYPRAVLEVCACKFGHMPQIEA 92 S G A L L D +CC DRDA P A +C C F H P A Sbjct: 7544 SSHGQRATCLCLCGDMARKCCVCC-DRDASCPAP-ATQAICHCSFSHNPSCNA 7696 >supercont1.2202 of Sphaeroforma arctica JP610 Length = 8088 Score = 28.9 bits (63), Expect = 4.5 Identities = 20/57 (35%), Positives = 23/57 (40%) Frame = -1 Query: 4 YYLYLQLLIAPLFALGDLSADECLALGFRKPDLACASCRGLAAFDLDLLRDGCHRCC 60 Y++YL L GD L L F + C S GL FD L C RCC Sbjct: 6603 YHIYLFLEDHHQKYCGDSPGHNSLRLRFTR----CTSSPGLPCFDFRLRCFVCRRCC 6445 >supercont1.4520 of Sphaeroforma arctica JP610 Length = 2417 Score = 28.5 bits (62), Expect = 5.9 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Frame = +1 Query: 49 LDLLRDGCHRCCAHTQDRDAPKRYPRAVLEVCACKFGHMP--QIEAFVRGPKHKR 101 L+ LRD H C +P ++ + A G +P Q F RGP+H+R Sbjct: 1498 LETLRDR*HSSCLADT*IFKHTTFPSTIVPILALLTGGLPWQQSHTF*RGPRHRR 1662 >supercont1.83 of Sphaeroforma arctica JP610 Length = 164918 Score = 28.5 bits (62), Expect = 5.9 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 8/73 (10%) Frame = +3 Query: 55 GCHRCCAHTQDRDA--PKRYPRAV--LEVCACKFGHMPQIEAFVRGPKH----KRFPKLS 106 GCH C AH + KR R V + VC C +I V K+ K+ KLS Sbjct: 110604 GCHTCSAHGVESRG*FCKRRSRCVYWIIVCVCGDWVGQEIPKIVNNKKYLKWLKKNLKLS 110783 Query: 107 IKYLRGADPIIKL 119 KYL+ +KL Sbjct: 110784 KKYLKLLKKYLKL 110822 >supercont1.1656 of Sphaeroforma arctica JP610 Length = 12428 Score = 28.1 bits (61), Expect = 7.6 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%) Frame = -1 Query: 54 DGCHRC----CAHTQDRDAPKRYPRAVLEVCACKFGHM 87 +GC C CAHT+ R R VC C FGH+ Sbjct: 1538 NGCSPCRLHACAHTRARCCSARAEHVC--VCVCVFGHV 1431 >supercont1.6863 of Sphaeroforma arctica JP610 Length = 1557 Score = 27.7 bits (60), Expect = 10.0 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = +2 Query: 3 AYYLYLQLLIAPLFALG 19 AY+LY+QLL AP +A+G Sbjct: 860 AYHLYIQLLTAPAWAVG 910 >supercont1.6171 of Sphaeroforma arctica JP610 Length = 1729 Score = 27.7 bits (60), Expect = 10.0 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = -1 Query: 57 HRCCAHTQDR---DAPKRYPRAVLEVCACKFGHMPQIEAFVR 95 H C A T ++ Y RAV+ CA +GH P+ +++R Sbjct: 934 HPCTAGTTRHTYAESSVSYARAVVVSCAVVYGHHPRSRSYLR 809 >supercont1.67 of Sphaeroforma arctica JP610 Length = 179553 Score = 27.7 bits (60), Expect = 10.0 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = -1 Query: 47 FDLDLLRDGC-HRCCAHTQDRDAPKRYPRAVLEVCACKFGH 86 F +L + G R C HT P V +VCAC++ H Sbjct: 157965 FSAELSKSGTDRRICIHTLSATTPCSISGHVAKVCACEYIH 157843 Database: S.arctica/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 121,588,341 Number of sequences in database: 15,618 Lambda K H 0.327 0.143 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,589,089 Number of Sequences: 15618 Number of extensions: 537262 Number of successful extensions: 2461 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1649 Number of HSP's successfully gapped in prelim test: 75 Number of HSP's that attempted gapping in prelim test: 542 Number of HSP's gapped (non-prelim): 2116 length of query: 150 length of database: 40,529,447 effective HSP length: 99 effective length of query: 51 effective length of database: 38,983,265 effective search space: 1988146515 effective search space used: 1988146515 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 60 (27.7 bits)