TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|241685802|ref|XP_002412809.1| salivary selenoprotein precursor, putative [Ixodes scapularis] (150 letters) Database: P.capsici/genome.fa 917 sequences; 64,023,748 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PHYCAscaffold_77 36 0.022 PHYCAscaffold_47 29 2.0 PHYCAscaffold_17 28 3.4 PHYCAscaffold_333 28 4.5 PHYCAscaffold_9 28 4.5 PHYCAscaffold_136 28 5.9 PHYCAscaffold_10 28 5.9 PHYCAscaffold_31 27 7.7 PHYCAscaffold_8 27 7.7 PHYCAscaffold_3 27 7.7 >PHYCAscaffold_77 Length = 232015 Score = 35.8 bits (81), Expect = 0.022 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 16/123 (13%) Frame = +3 Query: 24 DECLALGFRKPDLACASCRGLAAF--------------DLDLLRDGCHRCCAHTQD--RD 67 D C LGF L C C L+ F ++ + C CC+ Sbjct: 95061 DRCTTLGFDADALDCRLCDDLSTFLTSKVSKKKSKKTKSVENVVTECQECCSDFSKVLEA 95240 Query: 68 APKRYPRAVLEVCACKFGHMPQIEAFVRGPKHKRFPKLSIKYLRGADPIIKLMDDRGEVQ 127 +RYP+ L V + P++ FV + L ++ P+++ D+ GE Sbjct: 95241 EGRRYPKVALAVNRRRLKRYPKVANFVEN-HADQIKGLEVQETDPRLPMLEFFDENGEKV 95417 Query: 128 EEL 130 EE+ Sbjct: 95418 EEI 95426 >PHYCAscaffold_47 Length = 556112 Score = 29.3 bits (64), Expect = 2.0 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = -2 Query: 54 DGCHRCCAHTQDRDAPKRYPRAVLEVCACKFGHMPQIEAFVRGPKHKRFPKLSIKY 109 DGC CC H+ P V EVC F +P+I V +H+ L ++Y Sbjct: 86914 DGCSLCCGHSSLHTPCSLSPIHVPEVCKPHF--VPEIPDGVSFDQHRDTIPLLLRY 86753 >PHYCAscaffold_17 Length = 985188 Score = 28.5 bits (62), Expect = 3.4 Identities = 17/54 (31%), Positives = 23/54 (42%) Frame = -1 Query: 13 APLFALGDLSADECLALGFRKPDLACASCRGLAAFDLDLLRDGCHRCCAHTQDR 66 AP A+ +S E + G+ +PD A+CR A D C C DR Sbjct: 694182 APCPAMPRVSIGESVQHGYPRPDAGNATCRPWPAI------DACQEACDKPSDR 694039 >PHYCAscaffold_333 Length = 5955 Score = 28.1 bits (61), Expect = 4.5 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 5/98 (5%) Frame = +3 Query: 30 GFRKPDLACASCRGLAA-----FDLDLLRDGCHRCCAHTQDRDAPKRYPRAVLEVCACKF 84 G+ DLA C G D +R+ QD P +E C Sbjct: 3042 GYEASDLAIRRCTGYCEQMDIHSDASTIREALVFSAFLRQDSSVPDSQKYDSVEECLELL 3221 Query: 85 GHMPQIEAFVRGPKHKRFPKLSIKYLRGADPIIKLMDD 122 + VRG +R +L+I ADP + +D+ Sbjct: 3222 DLQSVADEIVRGSPTERMKRLTIGVELAADPRVLFLDE 3335 >PHYCAscaffold_9 Length = 1114135 Score = 28.1 bits (61), Expect = 4.5 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 5/98 (5%) Frame = -2 Query: 30 GFRKPDLACASCRGLAA-----FDLDLLRDGCHRCCAHTQDRDAPKRYPRAVLEVCACKF 84 G+ DLA C G D +R+ QD P +E C Sbjct: 803154 GYEASDLAIRRCTGYCEQMDIHSDASTIREALVFSAFLRQDSSVPDSQKYDSVEECLELL 802975 Query: 85 GHMPQIEAFVRGPKHKRFPKLSIKYLRGADPIIKLMDD 122 + VRG +R +L+I ADP + +D+ Sbjct: 802974 DLQSVADEIVRGSPTERMKRLTIGVELAADPRVLFLDE 802861 >PHYCAscaffold_136 Length = 38611 Score = 27.7 bits (60), Expect = 5.9 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 4/72 (5%) Frame = +1 Query: 8 LQLLIAPLFALGDLSADEC----LALGFRKPDLACASCRGLAAFDLDLLRDGCHRCCAHT 63 +++L PLF DL+ D C L + P LA S L+ L L C CC + Sbjct: 3700 IRILTDPLFIPADLAIDPCPFVLLPKVVKTPILATHSSVSLS--HLPLFGASCKICCCSS 3873 Query: 64 QDRDAPKRYPRA 75 D +PR+ Sbjct: 3874 PDSLRLMIFPRS 3909 >PHYCAscaffold_10 Length = 1190366 Score = 27.7 bits (60), Expect = 5.9 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -2 Query: 58 RCCAHTQDRDAPKRYPRAVLEVCACKFGHMPQ 89 +C AH R+ P +PRA + +C H PQ Sbjct: 428140 QCHAHRHQRETP--HPRAGSQTSSCSCSHTPQ 428051 >PHYCAscaffold_31 Length = 686815 Score = 27.3 bits (59), Expect = 7.7 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 8/54 (14%) Frame = +1 Query: 17 ALGDLSADECLALGFRKPDLACASCRGLAAFDLDLLRD--------GCHRCCAH 62 +LGD + L+ FR D + SCR +F + LR GC R H Sbjct: 241129 SLGD*ATSTLLSYWFRVEDKSVESCRKFHSFHIVFLRQEELQRV*RGCSRLARH 241290 >PHYCAscaffold_8 Length = 1194346 Score = 27.3 bits (59), Expect = 7.7 Identities = 16/57 (28%), Positives = 25/57 (43%) Frame = -2 Query: 75 AVLEVCACKFGHMPQIEAFVRGPKHKRFPKLSIKYLRGADPIIKLMDDRGEVQEELS 131 +VL VC CK GH + K + + ++L G + + D+ G E LS Sbjct: 1119639 SVLRVCVCKIGHAEAV-----ANKARLRHRARSRWLEGCSTAMGVTDNTGSSLETLS 1119484 >PHYCAscaffold_3 Length = 1611504 Score = 27.3 bits (59), Expect = 7.7 Identities = 11/19 (57%), Positives = 11/19 (57%) Frame = +3 Query: 55 GCHRCCAHTQDRDAPKRYP 73 G H CC HT DAP YP Sbjct: 895452 GTHTCCPHT---DAPSHYP 895499 Database: P.capsici/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 64,023,748 Number of sequences in database: 917 Lambda K H 0.327 0.143 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,758,444 Number of Sequences: 917 Number of extensions: 267577 Number of successful extensions: 1855 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 67 Number of HSP's that attempted gapping in prelim test: 1212 Number of HSP's gapped (non-prelim): 1179 length of query: 150 length of database: 21,341,249 effective HSP length: 95 effective length of query: 55 effective length of database: 21,254,134 effective search space: 1168977370 effective search space used: 1168977370 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 58 (26.9 bits)