TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|241685802|ref|XP_002412809.1| salivary selenoprotein
precursor, putative [Ixodes scapularis]
         (150 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330850194|gb|ADNL01000409.1| Astrammina rara contig00447, who...    24   1.6  
gi|330850545|gb|ADNL01000058.1| Astrammina rara contig00061, who...    24   1.6  
gi|330847923|gb|ADNL01002680.1| Astrammina rara contig03164, who...    23   2.7  
gi|330848016|gb|ADNL01002587.1| Astrammina rara contig03062, who...    23   2.7  
gi|330847390|gb|ADNL01003213.1| Astrammina rara contig02625, who...    22   4.7  
gi|330848320|gb|ADNL01002283.1| Astrammina rara contig02726, who...    22   8.0  
gi|330848585|gb|ADNL01002018.1| Astrammina rara contig02402, who...    22   8.0  

>gi|330850194|gb|ADNL01000409.1| Astrammina rara contig00447, whole
           genome shotgun sequence
          Length = 760

 Score = 23.9 bits (50), Expect = 1.6
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
 Frame = -1

Query: 22  SADECLALGFRKPDLACASCRGL-AAFDLDLLRDGCHRCCAHTQDRDAPKRYPRAVLEVC 80
           S + C A  + +P +AC +     AAF           CC  T++   P+R  R    V 
Sbjct: 598 SNNNCWAKPYLQPGVACQNNHQEGAAF-------ATRECCGQTRNPSCPQRVWRGHHSVI 440

Query: 81  ACKFGH 86
            C   H
Sbjct: 439 RCSPTH 422


>gi|330850545|gb|ADNL01000058.1| Astrammina rara contig00061, whole
            genome shotgun sequence
          Length = 9271

 Score = 23.9 bits (50), Expect = 1.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -1

Query: 33   KPDLACASCRGLAAFDLDLLRDGCHRC 59
            KP   C  C+   A +    RD C RC
Sbjct: 3205 KP*QKCTQCKSNTALE*ATQRDRCDRC 3125


>gi|330847923|gb|ADNL01002680.1| Astrammina rara contig03164, whole
           genome shotgun sequence
          Length = 2986

 Score = 23.1 bits (48), Expect = 2.7
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 61  AHTQDRDAPKRYPRAVLEVCACKFGHMPQIEAFVR 95
           +HTQ   A +R  +       C +GH    E F R
Sbjct: 555 SHTQSTHAVQRQTKGEYVARGCTYGHSYAAECF*R 659


>gi|330848016|gb|ADNL01002587.1| Astrammina rara contig03062, whole
           genome shotgun sequence
          Length = 1906

 Score = 23.1 bits (48), Expect = 2.7
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -3

Query: 14  PLFALGDLSADECLALGFRKPDLACASCRGLAAFDL 49
           P FAL  ++    ++  F    + C SC+   +F +
Sbjct: 197 PAFALSTIACSLIVSCSFSNSSILCNSCKRNNSFSI 90


>gi|330847390|gb|ADNL01003213.1| Astrammina rara contig02625, whole
           genome shotgun sequence
          Length = 13634

 Score = 22.3 bits (46), Expect = 4.7
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -2

Query: 56  CHRCCAHTQDR 66
           CH+CC H + +
Sbjct: 421 CHKCCRHLKSK 389


>gi|330848320|gb|ADNL01002283.1| Astrammina rara contig02726, whole
            genome shotgun sequence
          Length = 1126

 Score = 21.6 bits (44), Expect = 8.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 35   DLACASCRGLAAFDL 49
            D+AC  C GL+ F L
Sbjct: 1005 DVACGGCGGLSEFVL 1049


>gi|330848585|gb|ADNL01002018.1| Astrammina rara contig02402, whole
           genome shotgun sequence
          Length = 238

 Score = 21.6 bits (44), Expect = 8.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 57  HRCCAHTQDRDAPKRYPRAVLEVCACKF 84
           HR   HT+ R   KR     + +  CKF
Sbjct: 148 HRQGRHTRSRHLRKRKNEN*INIVMCKF 65


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.327    0.143    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 288,305
Number of Sequences: 3231
Number of extensions: 4319
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of query: 150
length of database: 483,365
effective HSP length: 67
effective length of query: 83
effective length of database: 266,888
effective search space: 22151704
effective search space used: 22151704
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 43 (21.2 bits)