TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed8.Q4PMT2_IXOSC/73-150
         (78 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_8                                                        27   3.5  
PHYCAscaffold_73                                                       26   7.8  

>PHYCAscaffold_8
          Length = 1194346

 Score = 27.3 bits (59), Expect = 3.5
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -2

Query: 3       AVLEVCACKFGHMPQIEAFVRGPKHKRFPKLSIKYLRGADPIIKLMDDRGEVQEELS 59
               +VL VC CK GH   +       K +   +   ++L G    + + D+ G   E LS
Sbjct: 1119639 SVLRVCVCKIGHAEAV-----ANKARLRHRARSRWLEGCSTAMGVTDNTGSSLETLS 1119484


>PHYCAscaffold_73
          Length = 348431

 Score = 26.2 bits (56), Expect = 7.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 10     CKFGHMPQIEAFVRGPKHKRFPK 32
              C++GH+ ++E+ V  P H   P+
Sbjct: 210895 CRYGHVEKLESMVSIPSHSPHPQ 210963


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.322    0.141    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,608,076
Number of Sequences: 917
Number of extensions: 63261
Number of successful extensions: 277
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 130
length of query: 78
length of database: 21,341,249
effective HSP length: 53
effective length of query: 25
effective length of database: 21,292,648
effective search space: 532316200
effective search space used: 532316200
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)