TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed8.Q4PMT2_IXOSC/73-150
         (78 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig59  |  | 1 to 9375                                            28   0.78 
Lt_contig1530  |  | 1 to 14591                                         25   6.6  
Lt_contig1274  |  | 1 to 5865                                          25   8.6  
Lt_contig6793  |  | 1 to 7690                                          25   8.6  
Lt_contig3625  |  | 1 to 2940                                          25   8.6  

>Lt_contig59  |  | 1 to 9375
          Length = 9375

 Score = 28.5 bits (62), Expect = 0.78
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = -2

Query: 24   GPKHKRFPKLSIKYLR------GADPIIKLMDDRGEVQEELSIKKW 63
            G  H R+P L  +  R      GADP+IK   D+G     L I  W
Sbjct: 4661 GHGHCRYPYLHTRRERRRLRDTGADPVIKASCDKGHHHVHLHIATW 4524


>Lt_contig1530  |  | 1 to 14591
          Length = 14591

 Score = 25.4 bits (54), Expect = 6.6
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -1

Query: 7     VCACKFGHMPQIEAFVRGPKHKRFPKLSIKYLRGADPIIKLMDDRGEVQEELSIKK 62
             VC C++  +P      +GP+ K   K  + Y  G +       +RGE + + S +K
Sbjct: 11366 VCVCEYAPLPASVGRGKGPQVKDANKKGLLYTYGKE------RERGEGESQQSDRK 11217


>Lt_contig1274  |  | 1 to 5865
          Length = 5865

 Score = 25.0 bits (53), Expect = 8.6
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -1

Query: 47   LMDDRGEVQEELSIKKWDTDTIEE 70
            ++DD  EV+E  SIK+ D+D++ +
Sbjct: 1146 IIDDAVEVKESASIKQEDSDSLPD 1075


>Lt_contig6793  |  | 1 to 7690
          Length = 7690

 Score = 25.0 bits (53), Expect = 8.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 6    EVCACKFGHMPQIEAFVRG 24
            EVC  + GH+P  E  +RG
Sbjct: 5399 EVCVWEEGHLPDAEGLLRG 5455


>Lt_contig3625  |  | 1 to 2940
          Length = 2940

 Score = 25.0 bits (53), Expect = 8.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 1   PRAVLEVCACKFGHMPQIEAFVRGPKHK 28
           PRA    CAC+  H     +  +G +HK
Sbjct: 102 PRARAHACACRGSHTKATASGDKGERHK 19


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.322    0.141    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,249,988
Number of Sequences: 7267
Number of extensions: 41688
Number of successful extensions: 214
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of query: 78
length of database: 10,532,946
effective HSP length: 52
effective length of query: 26
effective length of database: 10,155,062
effective search space: 264031612
effective search space used: 264031612
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)