TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed8.Q4PMT2_IXOSC/73-150
         (78 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced ...    46   5e-06
gi|328869808|gb|GL883018.1| Dictyostelium fasciculatum unplaced ...    25   8.4  

>gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_EU5ZYIE02H8LDV-5, whole genome shotgun
              sequence
          Length = 1919465

 Score = 45.8 bits (107), Expect = 5e-06
 Identities = 24/74 (32%), Positives = 43/74 (58%)
 Frame = -3

Query: 2      RAVLEVCACKFGHMPQIEAFVRGPKHKRFPKLSIKYLRGADPIIKLMDDRGEVQEELSIK 61
              +A+L +C  + G  P I+ FV   K + + K   ++  GA+P ++L D  G   E ++I+
Sbjct: 177096 KAILYICR*RMGAFPHIKEFV-DKKAREYTKFEHQHEPGANPRLELHDSEGAT-ETINIE 176923

Query: 62     KWDTDTIEEFLLEH 75
               W T+ +EEFL ++
Sbjct: 176922 SWKTEHLEEFLRDN 176881


>gi|328869808|gb|GL883018.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_Dfasci-G-b-285a01.f1-5, whole genome shotgun
              sequence
          Length = 1327167

 Score = 25.0 bits (53), Expect = 8.4
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 28     KRFPKLSIKYLRGADPIIKLMDDRGEVQEELSIKKWDTD-TIEEFLLEHLEQ 78
              K +  +SIK           ++   +V+++L +K+W ++ T+EE L   L++
Sbjct: 714385 KNYTIISIKKKNRVARTSSKLEKLAQVKKDLDVKEWSSNVTLEELLTSLLDK 714230


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.322    0.141    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,454,635
Number of Sequences: 25
Number of extensions: 24938
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 37
length of query: 78
length of database: 10,339,736
effective HSP length: 53
effective length of query: 25
effective length of database: 10,338,411
effective search space: 258460275
effective search space used: 258460275
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)