TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed8.Q4PMT2_IXOSC/73-150
         (78 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso...    55   6e-09
gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso...    26   5.4  
gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos...    26   5.4  

>gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole
               genome shotgun sequence
          Length = 4923596

 Score = 55.5 bits (132), Expect = 6e-09
 Identities = 27/71 (38%), Positives = 47/71 (66%)
 Frame = -1

Query: 5       LEVCACKFGHMPQIEAFVRGPKHKRFPKLSIKYLRGADPIIKLMDDRGEVQEELSIKKWD 64
               L VC  + G  PQI+ F+   K K + KLS+KY  GA+P + L+D  G+ +E+++I+ W 
Sbjct: 1140071 LVVCQ*RLGAHPQIKEFINN-KAKLYSKLSVKYENGANPRLTLVDSEGK-KEDINIESWK 1139898

Query: 65      TDTIEEFLLEH 75
                + +EE+L+++
Sbjct: 1139897 LENLEEYLVQN 1139865


>gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole
               genome shotgun sequence
          Length = 6357299

 Score = 25.8 bits (55), Expect = 5.4
 Identities = 14/67 (20%), Positives = 34/67 (50%)
 Frame = +1

Query: 12      FGHMPQIEAFVRGPKHKRFPKLSIKYLRGADPIIKLMDDRGEVQEELSIKKWDTDTIEEF 71
               +  +  ++  +   KHK + K S+      + ++K+ +        + + K + D+I EF
Sbjct: 1946941 YKRLETLKEIIEKLKHKIYEKSSLIRCCVVESLLKISNSN------VVLTKDENDSIIEF 1947102

Query: 72      LLEHLEQ 78
               +++HLE+
Sbjct: 1947103 IIKHLEK 1947123


>gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2,
              whole genome shotgun sequence
          Length = 8484197

 Score = 25.8 bits (55), Expect = 5.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 23     RGPKHKRFPKLSIKYLRGADPIIKLMDDRGEVQEELS 59
              + PK+K      +K +    P IK MDD  ++QEE++
Sbjct: 215453 KSPKNKTLKIKRVKSIVNHLPAIKSMDDVVKLQEEIT 215563


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.322    0.141    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,375,062
Number of Sequences: 6
Number of extensions: 22204
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 14
length of query: 78
length of database: 11,314,357
effective HSP length: 53
effective length of query: 25
effective length of database: 11,314,039
effective search space: 282850975
effective search space used: 282850975
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)