TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed8.Q4PMT2_IXOSC/73-150
         (78 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325180721|emb|FR824054.1| Albugo laibachii Nc14, genomic cont...    26   5.1  

>gi|325180721|emb|FR824054.1| Albugo laibachii Nc14, genomic contig
              CONTIG_9_NC14_v4_237024_240
          Length = 237024

 Score = 25.8 bits (55), Expect = 5.1
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -1

Query: 7      VCACKFGHMPQIEAFVRGPKHKRFPKLSIKYL--RGADPIIKLMDDRGEVQEELSIKKWD 64
              VC  +  H+  +EA    P  +    LS  Y     +   +K   +    Q++LSI +W+
Sbjct: 173646 VCTIEKPHLNGVEAIDISPDARFLTTLSAVYKTEESSQNDLKDQQEATAAQQDLSIWEWN 173467

Query: 65     TDTIEEFLLEHL 76
              T + ++  L+ L
Sbjct: 173466 TTSRQQTKLKPL 173431


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.322    0.141    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,840,752
Number of Sequences: 3816
Number of extensions: 31394
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of query: 78
length of database: 10,913,379
effective HSP length: 53
effective length of query: 25
effective length of database: 10,711,131
effective search space: 267778275
effective search space used: 267778275
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)