TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|111494225|ref|NP_579831.2| 15 kDa selenoprotein precursor
[Rattus norvegicus]
         (162 letters)

Database: P.polycephalum/genome.fa 
           297,657 sequences; 319,018,052 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Contig1408  16772 40662                                                30   4.3  
Contig4940  8810 17978                                                 29   9.7  

>Contig1408  16772 40662
          Length = 40662

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 54    LLGQFNLLPLDPVCRGC--CQEEAQFETKKLYAGAILEVCGXKLG 96
             +LGQ N  P     RGC  CQ+ +    +K +AG+  E C  + G
Sbjct: 33321 VLGQANRAPFSAARRGCACCQKRSSRAGRKSFAGSARERCERERG 33455


>Contig4940  8810 17978
          Length = 17978

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 35   SEACRELGFSSNLLCSSCDLLGQ 57
            +  C E GFS  LLCSSC+ L Q
Sbjct: 1583 TSGCLEKGFSDALLCSSCNDLEQ 1651


  Database: P.polycephalum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 319,018,052
  Number of sequences in database:  297,657
  
Lambda     K      H
   0.322    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,814,075
Number of Sequences: 297657
Number of extensions: 782753
Number of successful extensions: 3361
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3360
length of query: 162
length of database: 106,339,350
effective HSP length: 105
effective length of query: 57
effective length of database: 75,085,365
effective search space: 4279865805
effective search space used: 4279865805
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)