TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|111494225|ref|NP_579831.2| 15 kDa selenoprotein precursor [Rattus norvegicus] (162 letters) Database: G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|338242113|gb|AFNH01002108.1| Gregarina niphandrodes asmbl.287... 29 0.62 gi|338241326|gb|AFNH01002502.1| Gregarina niphandrodes asmbl.323... 28 1.1 gi|338242065|gb|AFNH01002132.1| Gregarina niphandrodes asmbl.289... 28 1.8 gi|338240993|gb|AFNH01002670.1| Gregarina niphandrodes asmbl.339... 27 2.4 gi|338242688|gb|AFNH01001821.1| Gregarina niphandrodes asmbl.261... 27 3.1 gi|338240579|gb|AFNH01002876.1| Gregarina niphandrodes asmbl.358... 27 4.0 gi|338244753|gb|AFNH01000788.1| Gregarina niphandrodes asmbl.167... 27 4.0 gi|338243066|gb|AFNH01001632.1| Gregarina niphandrodes asmbl.243... 26 5.3 gi|338245913|gb|AFNH01000209.1| Gregarina niphandrodes asmbl.118... 26 5.3 gi|338241394|gb|AFNH01002468.1| Gregarina niphandrodes asmbl.320... 26 6.9 gi|338242736|gb|AFNH01001797.1| Gregarina niphandrodes asmbl.259... 25 9.0 gi|338242746|gb|AFNH01001792.1| Gregarina niphandrodes asmbl.258... 25 9.0 >gi|338242113|gb|AFNH01002108.1| Gregarina niphandrodes asmbl.2875, whole genome shotgun sequence Length = 4595 Score = 29.3 bits (64), Expect = 0.62 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = -1 Query: 27 SALGAEFSSEACRELG---FSSNLLCSSCDLLGQFNLLPLDPVCRGCCQE 73 S +GA FS+ A R LG + ++C ++ G+F LLPL P+ C + Sbjct: 1913 SVVGAIFSASAGR-LGSCRITGPVICDDFNVTGRFPLLPLLPIVPTCTND 1767 >gi|338241326|gb|AFNH01002502.1| Gregarina niphandrodes asmbl.3236, whole genome shotgun sequence Length = 6164 Score = 28.5 bits (62), Expect = 1.1 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Frame = -2 Query: 59 NLLPLDPVCRGCCQEEAQ-FETKKLYAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQ 117 N+ P DP R + + F+T +LE C R QV F +LFR L Sbjct: 676 NVPPEDPRSRSALAQAMEVFQT-------VLEFCEGDTDRCDQVFQFFNEFTLRLFRRLH 518 Query: 118 IKYVRGSDPVLK-LLDDNGNIAEELSI 143 ++R P LK L +N + L + Sbjct: 517 TDWLRAITPELKRKLKNNARLMSPLPV 437 >gi|338242065|gb|AFNH01002132.1| Gregarina niphandrodes asmbl.2897, whole genome shotgun sequence Length = 2490 Score = 27.7 bits (60), Expect = 1.8 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 38 CRELGFSSNLLCSSCDLLGQFNLLPLDPVCR 68 CR + + + C L+GQ LLPL P CR Sbjct: 1323 CRPSAATPAGVTAVCCLVGQLMLLPLRPACR 1415 >gi|338240993|gb|AFNH01002670.1| Gregarina niphandrodes asmbl.3394, whole genome shotgun sequence Length = 13367 Score = 27.3 bits (59), Expect = 2.4 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = -1 Query: 30 GAEFSSEACRELGFSSNLLCSSCDLLGQFNLLPLDP 65 G FSS +C L FSS ++CSS L LL L P Sbjct: 9482 GGAFSSSSC--LVFSSTIVCSSAMLFS*QILLTLTP 9381 >gi|338242688|gb|AFNH01001821.1| Gregarina niphandrodes asmbl.2611, whole genome shotgun sequence Length = 9934 Score = 26.9 bits (58), Expect = 3.1 Identities = 17/59 (28%), Positives = 25/59 (42%) Frame = -3 Query: 11 PALGLRLLLATAFQAVSALGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLPLDPVCRG 69 P+L R +A + S+ CRE G +L +SC + L+P CRG Sbjct: 8957 PSLAEREAKTSAANTRCGIDDVVSTTWCRESGTDDCMLLTSCYRCNVTGTMLLNPRCRG 8781 >gi|338240579|gb|AFNH01002876.1| Gregarina niphandrodes asmbl.3586, whole genome shotgun sequence Length = 14340 Score = 26.6 bits (57), Expect = 4.0 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = +2 Query: 6 GGWLRPALGLRLLLATAFQAVSALGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLPLDP 65 GGWL+ LGL LL + F + +G A + +S C + +L L+ LD Sbjct: 3236 GGWLQSWLGLPLLKTSEFVILLTVGIPAGLMAANNVDLAST--CVTVVVLFSSTLVLLDW 3409 Query: 66 VCRG 69 + G Sbjct: 3410 IYSG 3421 >gi|338244753|gb|AFNH01000788.1| Gregarina niphandrodes asmbl.1674, whole genome shotgun sequence Length = 1345 Score = 26.6 bits (57), Expect = 4.0 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Frame = -2 Query: 27 SALGAEFSSEA-----CRELGFSSNLLCSSCDLLGQFNLLPLDPVCRGCCQE 73 S +GA S+ A CR G ++C ++ G+F LLPL P+ C + Sbjct: 180 SVVGAISSASAGRLGSCRTTG---PVICDDFNVTGRFPLLPLLPIVPTCTND 34 >gi|338243066|gb|AFNH01001632.1| Gregarina niphandrodes asmbl.2438, whole genome shotgun sequence Length = 1766 Score = 26.2 bits (56), Expect = 5.3 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = +2 Query: 27 SALGAEFSSEACRELG---FSSNLLCSSCDLLGQFNLLPLDPVCRGCCQE 73 S +GA S+ A R LG + ++C ++ G+F LLPL P+ C + Sbjct: 1490 SVVGAISSASAGR-LGSCRITGPVICDDFNVTGRFPLLPLLPIVPTCTND 1636 >gi|338245913|gb|AFNH01000209.1| Gregarina niphandrodes asmbl.1186, whole genome shotgun sequence Length = 1284 Score = 26.2 bits (56), Expect = 5.3 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = +2 Query: 27 SALGAEFSSEACRELG---FSSNLLCSSCDLLGQFNLLPLDPVCRGCCQE 73 S +GA S+ A R LG + ++C ++ G+F LLPL P+ C + Sbjct: 947 SVVGAISSASAGR-LGSCRITGPVICDDFNVTGRFPLLPLLPIVPTCTND 1093 >gi|338241394|gb|AFNH01002468.1| Gregarina niphandrodes asmbl.3205, whole genome shotgun sequence Length = 7216 Score = 25.8 bits (55), Expect = 6.9 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -1 Query: 122 RGSDPVLKLLDDNGNIAEE 140 R SDP+ +LLD NG A E Sbjct: 5737 RLSDPITRLLDQNGGSASE 5681 >gi|338242736|gb|AFNH01001797.1| Gregarina niphandrodes asmbl.2590, whole genome shotgun sequence Length = 9046 Score = 25.4 bits (54), Expect = 9.0 Identities = 8/28 (28%), Positives = 14/28 (50%) Frame = +3 Query: 65 PVCRGCCQEEAQFETKKLYAGAILEVCG 92 P C GCC ++ + + G+ +CG Sbjct: 6516 PGCSGCCSDQVSSQDRYRVVGSPRVICG 6599 >gi|338242746|gb|AFNH01001792.1| Gregarina niphandrodes asmbl.2586, whole genome shotgun sequence Length = 13062 Score = 25.4 bits (54), Expect = 9.0 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 4/81 (4%) Frame = -2 Query: 15 LRLLLATAF---QAVSALGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLPLDPVCRGCC 71 +RL A+ F + +G +SE RELG G +L DP + Sbjct: 4982 VRLNSASTFCFTDGIGRMGRNVASEITRELGLKLQTSAVQIRYKGHKGMLVFDPYMKNPD 4803 Query: 72 QEEAQFETKKLYAGAI-LEVC 91 + KK + A+ LE+C Sbjct: 4802 YIAFRESQKKFESAAVSLEIC 4740 Database: G.niphandrodes/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.322 0.139 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,370,751 Number of Sequences: 3680 Number of extensions: 52194 Number of successful extensions: 248 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 243 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 248 length of query: 162 length of database: 5,120,956 effective HSP length: 87 effective length of query: 75 effective length of database: 4,800,796 effective search space: 360059700 effective search space used: 360059700 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.4 bits)