TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|111494225|ref|NP_579831.2| 15 kDa selenoprotein precursor
[Rattus norvegicus]
         (162 letters)

Database: C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig990  |  | 1 to 92272                                          29   1.5  
Cf_Contig893  |  | 1 to 117463                                         29   1.5  
Cf_Contig829  |  | 1 to 170636                                         29   1.5  
Cf_Contig1042  |  | 1 to 246505                                        29   1.9  
Cf_Contig979  |  | 1 to 87469                                          29   1.9  
Cf_Contig1047  |  | 1 to 300975                                        27   7.2  
Cf_Contig973  |  | 1 to 202041                                         27   9.5  
Cf_Contig896  |  | 1 to 63591                                          27   9.5  
Cf_Contig876  |  | 1 to 197301                                         27   9.5  

>Cf_Contig990  |  | 1 to 92272
          Length = 92272

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
 Frame = -3

Query: 29   LGAEFSSEACRE------LGFSSNLLCSSCDLLGQFNLLPLDPVCRGCCQEEAQFE 78
            LGA   ++ CR         FS++  C +  LL     LP  P C  CC    + E
Sbjct: 7160 LGAALPAQLCRHTRRCSLFSFSASRRCCAVQLLSFSPSLPCCPRCLSCCVNARRIE 6993


>Cf_Contig893  |  | 1 to 117463
          Length = 117463

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 19    LATAFQAVSALGAEFSSEACRELGFSSNLLCSS 51
             LA +F   +++ A FS+ +CR    SS   C+S
Sbjct: 64365 LADSFSLAASVSASFSTSSCRAFSMSSRSCCTS 64267


>Cf_Contig829  |  | 1 to 170636
          Length = 170636

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 48    LCSSCDLLGQFNLLPLDPVCRGCCQEEAQ 76
             LC  C   G F+ LP  PVC  CC   ++
Sbjct: 55462 LCRRCAAAG-FSCLPTSPVCAACCSARSR 55379


>Cf_Contig1042  |  | 1 to 246505
          Length = 246505

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 20     ATAFQAVSALGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLPLDPVCRGCC 71
              ATA  A +A  A  +S A       S + CSSC  +   N +   P+   CC
Sbjct: 113915 ATAAAAAAAAAASAASSAYDASRKDSMMSCSSCSPIRSSNGVTAAPLSASCC 113760


>Cf_Contig979  |  | 1 to 87469
          Length = 87469

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = -3

Query: 67    CRGCCQEEAQFETKKLYAGAILEVCGXK---LGRFPQVQAFVRSDKP---KLFRGLQIKY 120
             C   CQ+ A FET+K       E C      +   P  +   RS++P    LF+G  IK 
Sbjct: 38363 CTRVCQDRAAFETRKRNKNRNNETCSCSVFVMPSSPDEKEVGRSEEPSVSSLFQGN*IKA 38184

Query: 121   VRGSD 125
             +R  D
Sbjct: 38183 LRCGD 38169


>Cf_Contig1047  |  | 1 to 300975
          Length = 300975

 Score = 26.9 bits (58), Expect = 7.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 36     EACRELGFSSNLLCSSC 52
              EAC+E     N+LCSSC
Sbjct: 133402 EACQERATDGNILCSSC 133452


>Cf_Contig973  |  | 1 to 202041
          Length = 202041

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 38    CRELGFSSNLLCSSCDLLGQFNLLPLDPVCRGCCQEEAQFETK 80
             CR L  S +L      L GQ + L     CR CC  E +   +
Sbjct: 38906 CRPLHLSQHLRSCGEHLAGQRDGLSFPASCRPCCGREGKLRVE 39034


>Cf_Contig896  |  | 1 to 63591
          Length = 63591

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +1

Query: 27    SALGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLPLDPVCRGCCQEEAQFETK 80
             +A+ A     ACR L  S +L      L G  + L     CR CC  E +   +
Sbjct: 62755 AAMAAVGGCPACRPLHLSQHLRSCGEHLAGLRDGLSFPGSCRPCCGREGKLRVE 62916


>Cf_Contig876  |  | 1 to 197301
          Length = 197301

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 54     LLGQFNLLPLDPVCRGCCQEEAQFETKKLY 83
              LL  F+ LPL P+ RG C   A+  +  +Y
Sbjct: 160330 LLFSFSFLPLQPILRGVCVLPARGSS*NMY 160419


  Database: C.fasciculata/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.322    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,384,279
Number of Sequences: 1089
Number of extensions: 143708
Number of successful extensions: 732
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 274
length of query: 162
length of database: 12,349,441
effective HSP length: 93
effective length of query: 69
effective length of database: 12,248,164
effective search space: 845123316
effective search space used: 845123316
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)