TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed7.SEP15_RAT/84-161
         (78 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso...    27   3.2  
gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromoso...    26   5.4  

>gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole
               genome shotgun sequence
          Length = 5450249

 Score = 26.6 bits (57), Expect = 3.2
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
 Frame = -3

Query: 36      KYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVE--------EFLSEKLER 78
               K + GSD VL +  +N N  E+L ILK + D           EF+++ L++
Sbjct: 4880832 KPIIGSDDVLYIQLNNENFDEKLEILKNSRDETNSICLNDGLEFINDDLQK 4880680



 Score = 25.8 bits (55), Expect = 5.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 30      FRGLQIKYVRGSDPVLKLLDDNGN 53
               F G+ I+Y     P+L L + NGN
Sbjct: 2635901 FIGINIRYYEAVSPILDLTNGNGN 2635830


>gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole
               genome shotgun sequence
          Length = 3602379

 Score = 25.8 bits (55), Expect = 5.4
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -1

Query: 34      QIKYVRGSDPVLKLLDDNGNIAEELSILKW---NTDSVEEFL 72
               Q+K  R  D +LKL+ ++      +S+L W   N+ S+E F+
Sbjct: 3284637 QLKLTRFKDGLLKLISNSITKENAISLLLWSKNNSYSLERFI 3284512



 Score = 25.4 bits (54), Expect = 7.1
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +3

Query: 45      LKLLDDNGNIAEELSILKWNTDSVEE---FLSEKLE 77
               L+LL+D  N +EEL  L +    VEE    LSEK++
Sbjct: 3170019 LELLNDKQNNSEELLNLSYKIKKVEEERDRLSEKID 3170126


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.318    0.139    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,879,932
Number of Sequences: 6
Number of extensions: 14933
Number of successful extensions: 64
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 20
length of query: 78
length of database: 11,314,357
effective HSP length: 53
effective length of query: 25
effective length of database: 11,314,039
effective search space: 282850975
effective search space used: 282850975
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)