TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed7.SEP15_RAT/84-161
         (78 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330848091|gb|ADNL01002512.1| Astrammina rara contig02981, who...    22   3.3  
gi|330848318|gb|ADNL01002285.1| Astrammina rara contig02729, who...    21   7.4  
gi|330850424|gb|ADNL01000179.1| Astrammina rara contig00189, who...    20   9.7  

>gi|330848091|gb|ADNL01002512.1| Astrammina rara contig02981, whole
           genome shotgun sequence
          Length = 400

 Score = 21.9 bits (45), Expect = 3.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 45  LKLLDDNGNIAEELSI 60
           L + DD+GNI +E+ +
Sbjct: 282 LNIKDDDGNIVQEIEV 329


>gi|330848318|gb|ADNL01002285.1| Astrammina rara contig02729, whole
           genome shotgun sequence
          Length = 1010

 Score = 20.8 bits (42), Expect = 7.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 34  QIKYVRGSDPVLKLL 48
           Q KYV GSD  L+L+
Sbjct: 228 QSKYVTGSDTHLRLI 184


>gi|330850424|gb|ADNL01000179.1| Astrammina rara contig00189, whole
            genome shotgun sequence
          Length = 2213

 Score = 20.4 bits (41), Expect = 9.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 17   QVQAFVRSDKPKLFRGLQIKYV 38
            + +A  RSD  + F+  QIKY+
Sbjct: 1717 KTKAKERSDTIEKFKSQQIKYI 1652


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.318    0.139    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,195
Number of Sequences: 3231
Number of extensions: 710
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 78
length of database: 483,365
effective HSP length: 43
effective length of query: 35
effective length of database: 344,432
effective search space: 12055120
effective search space used: 12055120
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 41 (20.4 bits)