TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|125528691|gb|EAY76805.1| hypothetical protein OsI_04763
[Oryza sativa Indica Group]
         (162 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.35 of Sphaeroforma arctica JP610                            29   5.4  
supercont1.1556 of Sphaeroforma arctica JP610                          28   7.1  
supercont1.2489 of Sphaeroforma arctica JP610                          28   9.3  

>supercont1.35 of Sphaeroforma arctica JP610
          Length = 209558

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = -1

Query: 38    FTGLALCS-----DCNALAEFVKEQELVEDCRKCCTEDSDDSIS 76
             F G+  C      DC    +F+  Q L+++  K C ED+ DS+S
Sbjct: 34946 FGGVLSCGARCTFDCGQFYKFILFQFLLDELGKRCREDTKDSLS 34815


>supercont1.1556 of Sphaeroforma arctica JP610
          Length = 13650

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 8     AAAVALVLTSCSVLCLGAERFGARECEELGFTGLA 42
             +  +A+VL  C V     ERF A  C  + +TGLA
Sbjct: 13140 SVVIAVVLYKCYVHSRPKERFWAWMCSSVSYTGLA 13244


>supercont1.2489 of Sphaeroforma arctica JP610
          Length = 6270

 Score = 28.1 bits (61), Expect = 9.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 5    VYVAAAVALVLTSCSVLCLGAERFGARECEELGFTGL 41
            +YV A+V + L++C  +C+   R   + C E   TG+
Sbjct: 5886 IYVWASVLVCLSACVCVCVSHIRSHKQTCRETPITGI 5776


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.321    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,122,210
Number of Sequences: 15618
Number of extensions: 497639
Number of successful extensions: 1712
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 1319
length of query: 162
length of database: 40,529,447
effective HSP length: 100
effective length of query: 62
effective length of database: 38,967,647
effective search space: 2415994114
effective search space used: 2415994114
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)