TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|125528691|gb|EAY76805.1| hypothetical protein OsI_04763
[Oryza sativa Indica Group]
         (162 letters)

Database: P.polycephalum/genome.fa 
           297,657 sequences; 319,018,052 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Contig4940  8810 17978                                                 35   0.13 
Contig8610  4774 9190                                                  30   4.3  

>Contig4940  8810 17978
          Length = 17978

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 53   FVKEQELVEDCRKCCTEDSDDSISKLTF 80
            F+K  ELV +CR+CC+ ++DD++    F
Sbjct: 1806 FLKNTELVAECRECCSAEADDNVCLFLF 1889


>Contig8610  4774 9190
          Length = 9190

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 22   CLGAERFGARECEELGFTGLALCSDCNA 49
            C G E+FG   CEE G  G  +C  C A
Sbjct: 5922 CEGCEKFGCEGCEEFG--GSEVCEGCGA 5845


  Database: P.polycephalum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 319,018,052
  Number of sequences in database:  297,657
  
Lambda     K      H
   0.321    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,702,783
Number of Sequences: 297657
Number of extensions: 895550
Number of successful extensions: 3200
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3189
length of query: 162
length of database: 106,339,350
effective HSP length: 105
effective length of query: 57
effective length of database: 75,085,365
effective search space: 4279865805
effective search space used: 4279865805
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)