TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|125528691|gb|EAY76805.1| hypothetical protein OsI_04763
[Oryza sativa Indica Group]
         (162 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_40                                                       29   2.4  
PHYCAscaffold_11                                                       28   4.1  
PHYCAscaffold_537                                                      28   5.3  
PHYCAscaffold_8                                                        28   6.9  
PHYCAscaffold_49                                                       27   9.1  

>PHYCAscaffold_40
          Length = 570383

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
 Frame = -3

Query: 7      VAAAVALVLTSCSVLCLGAERFGARECEELGFTGLALCSDCN----------ALAEFVKE 56
              + +  +L     S  C+G     +R C E+G     +C  C           +L +    
Sbjct: 505533 ITSPSSLYTADPSFSCIGVN---SRNCSEVGSCCCGICGPCGGRDRVCCAMRSLPDGGVM 505363

Query: 57     QELVEDCRKCCTEDS 71
               E+  +CR CCT  S
Sbjct: 505362 SEVSRNCRTCCTSSS 505318


>PHYCAscaffold_11
          Length = 1076090

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -3

Query: 52     EFVKEQELVEDCRKCCTEDS---DDSISKLTFSGAIIEVCMRKLVFYPEIVGFLEED 105
              E   E ELV+D R+C    S   + S S+  F GA + +    ++F    +G +E D
Sbjct: 846417 ELADEPELVDDTRRCSISSSR*RNSSSSRPPFIGAAVGIAAVLMLF--SSIGMVEAD 846253


>PHYCAscaffold_537
          Length = 3184

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -1

Query: 56   EQELVEDCRKCCTEDSDDSISKLTFSG---AIIEVC 88
            +++L   C   CT+DS   IS +TFS    +I+E C
Sbjct: 3169 DRQLYFSCNTTCTDDSAAGISHVTFSC**LSIVEYC 3062


>PHYCAscaffold_8
          Length = 1194346

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
 Frame = +1

Query: 7      VAAAVALVLTSCSVLCLGAERFGARECEELGFTGLA-LCSDCNALAEFVKEQELVEDCRK 65
              V   +A+V    + LCL +  +G      +GF G+  +C+   A+         +  C  
Sbjct: 886015 VRNTLAIVTAFLTGLCLNSTEYGGTFSWTIGFNGIMWICTAATAIT--------IPFCWF 886170

Query: 66     CCTEDSDDSISKL-TFSGAIIEVCMRKLVFY 95
              C TE+  +    + TF   I EV ++K  FY
Sbjct: 886171 CVTEEKVEQTKSIGTFYKEIYEV-IQKEPFY 886260


>PHYCAscaffold_49
          Length = 508508

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = -3

Query: 17     SCSVLCLGAER---FGARECEELGFTGLALCSDCNALAEFVKEQELVEDCRKCCTEDSDD 73
              SC   CL   +   F  R+   LG    +  S      +F KE   V+D    CTED+DD
Sbjct: 238962 SCPRCCLEGRKLSLFLGRDILRLGIVLESTVSGLEVAEKFPKEN--VDDKPCHCTEDTDD 238789

Query: 74     S 74
              S
Sbjct: 238788 S 238786


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.321    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,977,289
Number of Sequences: 917
Number of extensions: 215385
Number of successful extensions: 833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 405
length of query: 162
length of database: 21,341,249
effective HSP length: 97
effective length of query: 65
effective length of database: 21,252,300
effective search space: 1381399500
effective search space used: 1381399500
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)