TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|125528691|gb|EAY76805.1| hypothetical protein OsI_04763 [Oryza sativa Indica Group] (162 letters) Database: G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|338241508|gb|AFNH01002411.1| Gregarina niphandrodes asmbl.315... 28 1.1 gi|338246296|gb|AFNH01000017.1| Gregarina niphandrodes asmbl.101... 27 3.1 gi|338243472|gb|AFNH01001429.1| Gregarina niphandrodes asmbl.225... 27 4.0 gi|338242588|gb|AFNH01001871.1| Gregarina niphandrodes asmbl.265... 26 6.9 gi|338242594|gb|AFNH01001868.1| Gregarina niphandrodes asmbl.265... 26 6.9 gi|338244493|gb|AFNH01000918.1| Gregarina niphandrodes asmbl.179... 26 6.9 gi|338239812|gb|AFNH01003260.1| Gregarina niphandrodes asmbl.618... 25 9.0 gi|338242201|gb|AFNH01002064.1| Gregarina niphandrodes asmbl.283... 25 9.0 gi|338242984|gb|AFNH01001673.1| Gregarina niphandrodes asmbl.247... 25 9.0 gi|338244513|gb|AFNH01000908.1| Gregarina niphandrodes asmbl.178... 25 9.0 gi|338245369|gb|AFNH01000481.1| Gregarina niphandrodes asmbl.143... 25 9.0 >gi|338241508|gb|AFNH01002411.1| Gregarina niphandrodes asmbl.3154, whole genome shotgun sequence Length = 11819 Score = 28.5 bits (62), Expect = 1.1 Identities = 14/44 (31%), Positives = 25/44 (56%) Frame = +2 Query: 71 SDDSISKLTFSGAIIEVCMRKLVFYPEIVGFLEEDKDDFPYVEA 114 SDD + L + A+I+ K++F + GF+E+ + D+ V A Sbjct: 2900 SDDGVYPLVRNSAVIDSFNLKVIFERDRTGFVEQTRYDYDTVIA 3031 >gi|338246296|gb|AFNH01000017.1| Gregarina niphandrodes asmbl.1012, whole genome shotgun sequence Length = 716 Score = 26.9 bits (58), Expect = 3.1 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = -2 Query: 14 VLTSCSVLCLGAERFGARECEELGFTGLALCSDCNALAEFVKEQEL 59 VL+SCSV+C G+ C ++G +G+ C EF K + + Sbjct: 367 VLSSCSVVCDGSTA-RRSSCLQIGSSGVWR*LSCGKEGEFKKNKRI 233 >gi|338243472|gb|AFNH01001429.1| Gregarina niphandrodes asmbl.2251, whole genome shotgun sequence Length = 5301 Score = 26.6 bits (57), Expect = 4.0 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +1 Query: 115 RYVYGSPP-KLIMLDDKGDQKETIRIDNWKREHIRQFLKEKVK 156 R ++G+ P +L+ GDQ + + + K E +R FLK K Sbjct: 4432 RDIFGARPIELLERGTGGDQVSVVYLSDLKPEEVRSFLKHASK 4560 >gi|338242588|gb|AFNH01001871.1| Gregarina niphandrodes asmbl.2657, whole genome shotgun sequence Length = 6834 Score = 25.8 bits (55), Expect = 6.9 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +3 Query: 55 KEQELVEDCRKCCTEDSDDSISKLTFSGAIIEVCMRKL 92 KE + V+ +C E D ISK SG ++E+C +++ Sbjct: 5976 KEAKDVDTLIECVNETFDYCISKDDESGDLVELCEQQI 6089 >gi|338242594|gb|AFNH01001868.1| Gregarina niphandrodes asmbl.2654, whole genome shotgun sequence Length = 14394 Score = 25.8 bits (55), Expect = 6.9 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +3 Query: 55 KEQELVEDCRKCCTEDSDDSISKLTFSGAIIEVCMRKL 92 KE + V+ +C E D ISK SG ++E+C +++ Sbjct: 7845 KEAKDVDTLIECVNETFDYCISKDDESGDLVELCEQQI 7958 >gi|338244493|gb|AFNH01000918.1| Gregarina niphandrodes asmbl.1791, whole genome shotgun sequence Length = 1027 Score = 25.8 bits (55), Expect = 6.9 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -2 Query: 7 VAAAVALVLTSCSVLCLGAER 27 VAAAV +L+SC LC+ ER Sbjct: 519 VAAAVP*ILSSCPKLCIFVER 457 >gi|338239812|gb|AFNH01003260.1| Gregarina niphandrodes asmbl.618, whole genome shotgun sequence Length = 1119 Score = 25.4 bits (54), Expect = 9.0 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +1 Query: 7 VAAAVALVLTSCSVLCLGAER 27 VAAAV +L+SC LC+ ER Sbjct: 67 VAAAVP*ILSSCPGLCIFVER 129 >gi|338242201|gb|AFNH01002064.1| Gregarina niphandrodes asmbl.2835, whole genome shotgun sequence Length = 8827 Score = 25.4 bits (54), Expect = 9.0 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = -2 Query: 115 RYVYGSPP-KLIMLDDKGDQKETIRIDNWKREHIRQFLKEKVK 156 R ++G+ P +L+ D GDQ + K E ++ FLK K Sbjct: 7911 RDIFGARPIELLERDTGGDQVSVVYSGELKPEEVQNFLKHASK 7783 >gi|338242984|gb|AFNH01001673.1| Gregarina niphandrodes asmbl.2476, whole genome shotgun sequence Length = 14030 Score = 25.4 bits (54), Expect = 9.0 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = +1 Query: 55 KEQELVEDCRKCCTEDSDDSI 75 K ++VEDC+ T ++DD I Sbjct: 12535 KTDQMVEDCKNAVTSETDDWI 12597 >gi|338244513|gb|AFNH01000908.1| Gregarina niphandrodes asmbl.1782, whole genome shotgun sequence Length = 2084 Score = 25.4 bits (54), Expect = 9.0 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -1 Query: 7 VAAAVALVLTSCSVLCLGAERFGARECEEL 36 +AAAV +L+SC L + ER +R+ E+L Sbjct: 317 LAAAVI*ILSSCPGLYIFVERSVSRDAEQL 228 >gi|338245369|gb|AFNH01000481.1| Gregarina niphandrodes asmbl.1430, whole genome shotgun sequence Length = 1626 Score = 25.4 bits (54), Expect = 9.0 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -2 Query: 7 VAAAVALVLTSCSVLCLGAER 27 VAAAV +L+SC LC+ ER Sbjct: 1562 VAAAVP*ILSSCPGLCIFVER 1500 Database: G.niphandrodes/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.321 0.138 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,362,467 Number of Sequences: 3680 Number of extensions: 50507 Number of successful extensions: 208 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 202 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 208 length of query: 162 length of database: 5,120,956 effective HSP length: 87 effective length of query: 75 effective length of database: 4,800,796 effective search space: 360059700 effective search space used: 360059700 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.4 bits)