TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|125528691|gb|EAY76805.1| hypothetical protein OsI_04763
[Oryza sativa Indica Group]
         (162 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325184111|emb|FR824098.1| Albugo laibachii Nc14, genomic cont...    30   0.75 
gi|325186025|emb|FR824142.1| Albugo laibachii Nc14, genomic cont...    30   0.75 
gi|325190797|emb|FR824333.1| Albugo laibachii Nc14, genomic cont...    29   1.7  
gi|325180954|emb|FR824056.1| Albugo laibachii Nc14, genomic cont...    27   4.9  
gi|325191276|emb|FR824389.1| Albugo laibachii Nc14, genomic cont...    27   4.9  
gi|325183377|emb|FR824086.1| Albugo laibachii Nc14, genomic cont...    27   6.3  

>gi|325184111|emb|FR824098.1| Albugo laibachii Nc14, genomic contig
             CONTIG_53_NC14_v4_112287_155
          Length = 112287

 Score = 30.0 bits (66), Expect = 0.75
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = -2

Query: 41    LALCSDCNALAEFV---KEQELVEDCRKCCTEDSDDSISKLTFSGAIIEVCMRKLVFYPE 97
             LA+   C A+   +   K QE + + R C    + D I  L    A  + C+R+   YP 
Sbjct: 18155 LAMT*KCRAVINILAM*KLQEYIANFRGCAVNIASDRIKTLPVHAAF*QRCVRRTPLYPS 17976

Query: 98    I 98
             I
Sbjct: 17975 I 17973


>gi|325186025|emb|FR824142.1| Albugo laibachii Nc14, genomic contig
             CONTIG_97_NC14_v4_80307_117
          Length = 80307

 Score = 30.0 bits (66), Expect = 0.75
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = -1

Query: 41    LALCSDCNALAEFV---KEQELVEDCRKCCTEDSDDSISKLTFSGAIIEVCMRKLVFYPE 97
             LA+   C A+   +   K QE + + R C    + D I  L    A  + C+R+   YP 
Sbjct: 17937 LAMT*KCRAVINILAM*KLQEYIANFRGCAVNIASDRIKTLPVHAAF*QRCVRRTPLYPS 17758

Query: 98    I 98
             I
Sbjct: 17757 I 17755


>gi|325190797|emb|FR824333.1| Albugo laibachii Nc14, genomic contig
           CONTIG_288_NC14_v4_32941_356
          Length = 32941

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 7   VAAAVALVLTSCSVLCLGAERFGARECEELGF 38
           V  A+AL+ T C+ L +    FG+ EC ++ F
Sbjct: 561 VGIALALIPTCCNALLIRIGHFGSSECSKIPF 656


>gi|325180954|emb|FR824056.1| Albugo laibachii Nc14, genomic contig
             CONTIG_11_NC14_v4_227311_235
          Length = 227311

 Score = 27.3 bits (59), Expect = 4.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 86    EVCMRKLVFYPEIVGFLEEDKD 107
             E+C  ++VFYP ++  + E KD
Sbjct: 50719 ELCFSRMVFYPSVIFQISEPKD 50784


>gi|325191276|emb|FR824389.1| Albugo laibachii Nc14, genomic contig
             CONTIG_344_NC14_v4_26189_1254
          Length = 26189

 Score = 27.3 bits (59), Expect = 4.9
 Identities = 13/51 (25%), Positives = 29/51 (56%)
 Frame = +3

Query: 93    VFYPEIVGFLEEDKDDFPYVEARYVYGSPPKLIMLDDKGDQKETIRIDNWK 143
             +FY E  G +++  + F   +A +V   PP  +++D     + ++++DNW+
Sbjct: 10989 MFYDECHGGIKDYPESFK--KAFHVAEPPPCKVIVDAIRSNQTSLQLDNWR 11135


>gi|325183377|emb|FR824086.1| Albugo laibachii Nc14, genomic contig
             CONTIG_41_NC14_v4_132528_243
          Length = 132528

 Score = 26.9 bits (58), Expect = 6.3
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +2

Query: 30    ARECEELGFTGLALCSD---CNALAEFVKEQELVEDCRKCCTEDSDDSISKLTFSGAIIE 86
             +R+C EL      LC D   C ++A     +     C  C  + S+ SISK   SG +  
Sbjct: 68972 SRKCNELE----CLCLDDFDCFSIAGIRANRSTCRRCA*CMKDSSNSSISK---SGTVSR 69130

Query: 87    VCMRK 91
             V M K
Sbjct: 69131 VKMEK 69145


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.321    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,850,530
Number of Sequences: 3816
Number of extensions: 102027
Number of successful extensions: 532
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 472
length of query: 162
length of database: 10,913,379
effective HSP length: 92
effective length of query: 70
effective length of database: 10,562,307
effective search space: 739361490
effective search space used: 739361490
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)