TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed6.A2WXV9_ORYSI/81-157
         (77 letters)

Database: L.donovani_BPK282A1/genome.fa 
           36 sequences; 32,444,998 total letters

Searching....................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig_28                                                              25   8.8  

>contig_28
          Length = 1171725

 Score = 25.0 bits (53), Expect = 8.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 32      VEARYVYGSPPKLIMLD 48
               V  RY++GSPPK +  D
Sbjct: 1113650 VTFRYIFGSPPKALCTD 1113700


  Database: L.donovani_BPK282A1/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,444,998
  Number of sequences in database:  36
  
Lambda     K      H
   0.321    0.144    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,466,833
Number of Sequences: 36
Number of extensions: 40547
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 2
length of query: 77
length of database: 10,814,999
effective HSP length: 52
effective length of query: 25
effective length of database: 10,813,127
effective search space: 270328175
effective search space used: 270328175
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)