TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= seed6.A2WXV9_ORYSI/81-157
         (77 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338243472|gb|AFNH01001429.1| Gregarina niphandrodes asmbl.225...    27   1.4  
gi|338242201|gb|AFNH01002064.1| Gregarina niphandrodes asmbl.283...    25   3.2  
gi|338242291|gb|AFNH01002019.1| Gregarina niphandrodes asmbl.279...    25   5.5  
gi|338241444|gb|AFNH01002443.1| Gregarina niphandrodes asmbl.318...    24   9.3  

>gi|338243472|gb|AFNH01001429.1| Gregarina niphandrodes asmbl.2251,
            whole genome shotgun sequence
          Length = 5301

 Score = 26.6 bits (57), Expect = 1.4
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 35   RYVYGSPP-KLIMLDDKGDQKETIRIDNWKREHIRQFLKEKVK 76
            R ++G+ P +L+     GDQ   + + + K E +R FLK   K
Sbjct: 4432 RDIFGARPIELLERGTGGDQVSVVYLSDLKPEEVRSFLKHASK 4560


>gi|338242201|gb|AFNH01002064.1| Gregarina niphandrodes asmbl.2835,
            whole genome shotgun sequence
          Length = 8827

 Score = 25.4 bits (54), Expect = 3.2
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 35   RYVYGSPP-KLIMLDDKGDQKETIRIDNWKREHIRQFLKEKVK 76
            R ++G+ P +L+  D  GDQ   +     K E ++ FLK   K
Sbjct: 7911 RDIFGARPIELLERDTGGDQVSVVYSGELKPEEVQNFLKHASK 7783


>gi|338242291|gb|AFNH01002019.1| Gregarina niphandrodes asmbl.2792,
            whole genome shotgun sequence
          Length = 9455

 Score = 24.6 bits (52), Expect = 5.5
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 35   RYVYGSPP-KLIMLDDKGDQKETIRIDNWKREHIRQFLKEKVK 76
            R ++G+ P +L+  D  GD+   +     K E ++ FLK   K
Sbjct: 5785 REIFGARPIELLERDTGGDEVSLVYSGELKPEEVQNFLKHSSK 5913


>gi|338241444|gb|AFNH01002443.1| Gregarina niphandrodes asmbl.3183,
             whole genome shotgun sequence
          Length = 19660

 Score = 23.9 bits (50), Expect = 9.3
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 38    YGSPPKLIMLDDKGDQKETIRIDNWKREH 66
             + +PP   +L  + D    +R D+W  +H
Sbjct: 10244 HSAPPPTAVLPPRHDHHPNLRRDHWTLDH 10158


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.321    0.144    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,462,273
Number of Sequences: 3680
Number of extensions: 16803
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of query: 77
length of database: 5,120,956
effective HSP length: 51
effective length of query: 26
effective length of database: 4,933,276
effective search space: 128265176
effective search space used: 128265176
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)